Atomistry » Magnesium » PDB 6u1j-6uey » 6ubq
Atomistry »
  Magnesium »
    PDB 6u1j-6uey »
      6ubq »

Magnesium in PDB 6ubq: Crystal Structure of Ketosteroid Isomerase From Pseudomonas Putida (Pksi) Bound to 4-Androstenedione at 100 K

Enzymatic activity of Crystal Structure of Ketosteroid Isomerase From Pseudomonas Putida (Pksi) Bound to 4-Androstenedione at 100 K

All present enzymatic activity of Crystal Structure of Ketosteroid Isomerase From Pseudomonas Putida (Pksi) Bound to 4-Androstenedione at 100 K:
5.3.3.1;

Protein crystallography data

The structure of Crystal Structure of Ketosteroid Isomerase From Pseudomonas Putida (Pksi) Bound to 4-Androstenedione at 100 K, PDB code: 6ubq was solved by F.Yabukarski, D.Herschlag, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 34.64 / 1.30
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 36.209, 74.316, 95.562, 90.00, 90.00, 90.00
R / Rfree (%) 15.2 / 17

Other elements in 6ubq:

The structure of Crystal Structure of Ketosteroid Isomerase From Pseudomonas Putida (Pksi) Bound to 4-Androstenedione at 100 K also contains other interesting chemical elements:

Chlorine (Cl) 2 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Ketosteroid Isomerase From Pseudomonas Putida (Pksi) Bound to 4-Androstenedione at 100 K (pdb code 6ubq). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of Ketosteroid Isomerase From Pseudomonas Putida (Pksi) Bound to 4-Androstenedione at 100 K, PDB code: 6ubq:

Magnesium binding site 1 out of 1 in 6ubq

Go back to Magnesium Binding Sites List in 6ubq
Magnesium binding site 1 out of 1 in the Crystal Structure of Ketosteroid Isomerase From Pseudomonas Putida (Pksi) Bound to 4-Androstenedione at 100 K


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Ketosteroid Isomerase From Pseudomonas Putida (Pksi) Bound to 4-Androstenedione at 100 K within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg203

b:23.2
occ:1.00
 O B:HOH432 2.0 27.3 1.0
O B:HOH332 2.1 22.9 1.0
O B:HOH310 2.1 22.3 1.0
O B:HOH416 2.1 33.7 1.0
O B:HOH354 2.2 27.1 1.0
OD1 B:ASP35 4.2 16.6 1.0
HD2 B:HIS110 4.2 37.9 1.0
OD2 B:ASP108 4.3 19.6 1.0
O B:HOH317 4.3 19.9 1.0
OE1 B:GLN114 4.3 20.0 1.0
OD2 B:ASP35 4.4 21.0 1.0
HB1 B:ALA33 4.4 16.3 1.0
O B:HOH406 4.4 56.7 1.0
OD2 B:ASP34 4.5 16.7 1.0
CG B:ASP35 4.6 17.4 1.0
HE22 B:GLN114 4.8 21.4 1.0
HB2 B:ASP108 4.8 21.1 1.0
OE1 B:GLU109 5.0 33.9 0.5
CD2 B:HIS110 5.0 31.6 1.0

Reference:

F.Yabukarski, D.Herschlag. Assessing Active Site Positioning and Testing Catalytic Proposals Via Ketosteroid Isomerase Conformational Ensembles To Be Published.
Page generated: Tue Oct 1 20:53:41 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy