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Magnesium in PDB 6uc0: Isolated S3D-Cofilin Bound to An Actin Filament

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Isolated S3D-Cofilin Bound to An Actin Filament (pdb code 6uc0). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 7 binding sites of Magnesium where determined in the Isolated S3D-Cofilin Bound to An Actin Filament, PDB code: 6uc0:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7;

Magnesium binding site 1 out of 7 in 6uc0

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Magnesium binding site 1 out of 7 in the Isolated S3D-Cofilin Bound to An Actin Filament


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Isolated S3D-Cofilin Bound to An Actin Filament within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg801

b:41.7
occ:1.00
 O3B A:ADP802 2.1 38.0 1.0
O2B A:ADP802 2.3 38.0 1.0
PB A:ADP802 2.6 38.0 1.0
OE1 A:GLN137 3.0 42.2 1.0
O3A A:ADP802 3.4 38.0 1.0
CD A:GLN137 3.7 42.2 1.0
O1B A:ADP802 4.0 38.0 1.0
OD1 A:ASP154 4.0 36.6 1.0
NE2 A:GLN137 4.1 42.2 1.0
CA A:GLY156 4.1 33.7 1.0
N A:GLY156 4.6 33.7 1.0
OD2 A:ASP154 4.6 36.6 1.0
O2A A:ADP802 4.6 38.0 1.0
PA A:ADP802 4.7 38.0 1.0
OD2 A:ASP11 4.7 48.3 1.0
CG A:ASP154 4.8 36.6 1.0
CG A:GLN137 4.8 42.2 1.0
CG2 A:VAL339 4.8 43.2 1.0
CB A:GLN137 4.9 42.2 1.0
OD1 A:ASP11 5.0 48.3 1.0
CA A:GLY13 5.0 42.8 1.0
NZ A:LYS18 5.0 43.9 1.0

Magnesium binding site 2 out of 7 in 6uc0

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Magnesium binding site 2 out of 7 in the Isolated S3D-Cofilin Bound to An Actin Filament


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Isolated S3D-Cofilin Bound to An Actin Filament within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg801

b:41.7
occ:1.00
 O3B B:ADP802 2.1 38.0 1.0
O2B B:ADP802 2.3 38.0 1.0
PB B:ADP802 2.6 38.0 1.0
OE1 B:GLN137 3.0 42.2 1.0
O3A B:ADP802 3.4 38.0 1.0
CD B:GLN137 3.7 42.2 1.0
O1B B:ADP802 4.0 38.0 1.0
OD1 B:ASP154 4.0 36.6 1.0
NE2 B:GLN137 4.1 42.2 1.0
CA B:GLY156 4.1 33.7 1.0
N B:GLY156 4.6 33.7 1.0
OD2 B:ASP154 4.6 36.6 1.0
O2A B:ADP802 4.6 38.0 1.0
PA B:ADP802 4.7 38.0 1.0
OD2 B:ASP11 4.7 48.3 1.0
CG B:ASP154 4.8 36.6 1.0
CG B:GLN137 4.8 42.2 1.0
CG2 B:VAL339 4.8 43.2 1.0
CB B:GLN137 4.9 42.2 1.0
OD1 B:ASP11 5.0 48.3 1.0
CA B:GLY13 5.0 42.8 1.0
NZ B:LYS18 5.0 43.9 1.0

Magnesium binding site 3 out of 7 in 6uc0

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Magnesium binding site 3 out of 7 in the Isolated S3D-Cofilin Bound to An Actin Filament


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Isolated S3D-Cofilin Bound to An Actin Filament within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg801

b:41.7
occ:1.00
 O3B C:ADP802 2.1 38.0 1.0
O2B C:ADP802 2.3 38.0 1.0
PB C:ADP802 2.6 38.0 1.0
OE1 C:GLN137 3.0 42.2 1.0
O3A C:ADP802 3.4 38.0 1.0
CD C:GLN137 3.7 42.2 1.0
O1B C:ADP802 4.0 38.0 1.0
OD1 C:ASP154 4.0 36.6 1.0
NE2 C:GLN137 4.1 42.2 1.0
CA C:GLY156 4.1 33.7 1.0
N C:GLY156 4.6 33.7 1.0
OD2 C:ASP154 4.6 36.6 1.0
O2A C:ADP802 4.6 38.0 1.0
PA C:ADP802 4.7 38.0 1.0
OD2 C:ASP11 4.7 48.3 1.0
CG C:ASP154 4.8 36.6 1.0
CG C:GLN137 4.8 42.2 1.0
CG2 C:VAL339 4.8 43.2 1.0
CB C:GLN137 4.9 42.2 1.0
OD1 C:ASP11 5.0 48.3 1.0
CA C:GLY13 5.0 42.8 1.0
NZ C:LYS18 5.0 43.9 1.0

Magnesium binding site 4 out of 7 in 6uc0

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Magnesium binding site 4 out of 7 in the Isolated S3D-Cofilin Bound to An Actin Filament


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Isolated S3D-Cofilin Bound to An Actin Filament within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg801

b:41.7
occ:1.00
 O3B D:ADP802 2.1 38.0 1.0
O2B D:ADP802 2.3 38.0 1.0
PB D:ADP802 2.6 38.0 1.0
OE1 D:GLN137 3.0 42.2 1.0
O3A D:ADP802 3.4 38.0 1.0
CD D:GLN137 3.7 42.2 1.0
O1B D:ADP802 4.0 38.0 1.0
OD1 D:ASP154 4.0 36.6 1.0
NE2 D:GLN137 4.1 42.2 1.0
CA D:GLY156 4.1 33.7 1.0
N D:GLY156 4.6 33.7 1.0
OD2 D:ASP154 4.6 36.6 1.0
O2A D:ADP802 4.6 38.0 1.0
PA D:ADP802 4.7 38.0 1.0
OD2 D:ASP11 4.7 48.3 1.0
CG D:ASP154 4.8 36.6 1.0
CG D:GLN137 4.8 42.2 1.0
CG2 D:VAL339 4.8 43.2 1.0
CB D:GLN137 4.9 42.2 1.0
OD1 D:ASP11 5.0 48.3 1.0
CA D:GLY13 5.0 42.8 1.0
NZ D:LYS18 5.0 43.9 1.0

Magnesium binding site 5 out of 7 in 6uc0

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Magnesium binding site 5 out of 7 in the Isolated S3D-Cofilin Bound to An Actin Filament


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Isolated S3D-Cofilin Bound to An Actin Filament within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Mg801

b:41.7
occ:1.00
 O3B E:ADP802 2.1 38.0 1.0
O2B E:ADP802 2.3 38.0 1.0
PB E:ADP802 2.6 38.0 1.0
OE1 E:GLN137 3.0 42.2 1.0
O3A E:ADP802 3.4 38.0 1.0
CD E:GLN137 3.7 42.2 1.0
O1B E:ADP802 4.0 38.0 1.0
OD1 E:ASP154 4.0 36.6 1.0
NE2 E:GLN137 4.1 42.2 1.0
CA E:GLY156 4.1 33.7 1.0
N E:GLY156 4.6 33.7 1.0
OD2 E:ASP154 4.6 36.6 1.0
O2A E:ADP802 4.6 38.0 1.0
PA E:ADP802 4.7 38.0 1.0
OD2 E:ASP11 4.7 48.3 1.0
CG E:ASP154 4.8 36.6 1.0
CG E:GLN137 4.8 42.2 1.0
CG2 E:VAL339 4.8 43.2 1.0
CB E:GLN137 4.9 42.2 1.0
OD1 E:ASP11 5.0 48.3 1.0
CA E:GLY13 5.0 42.8 1.0
NZ E:LYS18 5.0 43.9 1.0

Magnesium binding site 6 out of 7 in 6uc0

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Magnesium binding site 6 out of 7 in the Isolated S3D-Cofilin Bound to An Actin Filament


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Isolated S3D-Cofilin Bound to An Actin Filament within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Mg801

b:41.7
occ:1.00
 O3B F:ADP802 2.1 38.0 1.0
O2B F:ADP802 2.3 38.0 1.0
PB F:ADP802 2.6 38.0 1.0
OE1 F:GLN137 3.0 42.2 1.0
O3A F:ADP802 3.4 38.0 1.0
CD F:GLN137 3.7 42.2 1.0
O1B F:ADP802 4.0 38.0 1.0
OD1 F:ASP154 4.0 36.6 1.0
NE2 F:GLN137 4.1 42.2 1.0
CA F:GLY156 4.1 33.7 1.0
N F:GLY156 4.6 33.7 1.0
OD2 F:ASP154 4.6 36.6 1.0
O2A F:ADP802 4.6 38.0 1.0
PA F:ADP802 4.7 38.0 1.0
OD2 F:ASP11 4.7 48.3 1.0
CG F:ASP154 4.8 36.6 1.0
CG F:GLN137 4.8 42.2 1.0
CG2 F:VAL339 4.8 43.2 1.0
CB F:GLN137 4.9 42.2 1.0
OD1 F:ASP11 5.0 48.3 1.0
CA F:GLY13 5.0 42.8 1.0
NZ F:LYS18 5.0 43.9 1.0

Magnesium binding site 7 out of 7 in 6uc0

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Magnesium binding site 7 out of 7 in the Isolated S3D-Cofilin Bound to An Actin Filament


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Isolated S3D-Cofilin Bound to An Actin Filament within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Mg801

b:41.7
occ:1.00
 O3B G:ADP802 2.1 38.0 1.0
O2B G:ADP802 2.3 38.0 1.0
PB G:ADP802 2.6 38.0 1.0
OE1 G:GLN137 3.0 42.2 1.0
O3A G:ADP802 3.4 38.0 1.0
CD G:GLN137 3.7 42.2 1.0
O1B G:ADP802 4.0 38.0 1.0
OD1 G:ASP154 4.0 36.6 1.0
NE2 G:GLN137 4.1 42.2 1.0
CA G:GLY156 4.1 33.7 1.0
N G:GLY156 4.6 33.7 1.0
OD2 G:ASP154 4.6 36.6 1.0
O2A G:ADP802 4.6 38.0 1.0
PA G:ADP802 4.7 38.0 1.0
OD2 G:ASP11 4.7 48.3 1.0
CG G:ASP154 4.8 36.6 1.0
CG G:GLN137 4.8 42.2 1.0
CG2 G:VAL339 4.8 43.2 1.0
CB G:GLN137 4.9 42.2 1.0
OD1 G:ASP11 5.0 48.3 1.0
CA G:GLY13 5.0 42.8 1.0
NZ G:LYS18 5.0 43.9 1.0

Reference:

A.R.Huehn, J.P.Bibeau, A.C.Schramm, W.Cao, E.M.De La Cruz, C.V.Sindelar. Structures of Cofilin-Induced Structural Changes Reveal Local and Asymmetric Perturbations of Actin Filaments Proc.Natl.Acad.Sci.Usa 2019.
ISSN: ESSN 1091-6490
DOI: 10.1073/PNAS.1915987117
Page generated: Tue Oct 1 20:54:24 2024

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