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Magnesium in PDB 6ued: Apo Pseudomonas Aeruginosa Lpxd Structure

Protein crystallography data

The structure of Apo Pseudomonas Aeruginosa Lpxd Structure, PDB code: 6ued was solved by Y.Chen, K.Kroeck, M.Sacco, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 32.71 / 1.55
Space group H 3
Cell size a, b, c (Å), α, β, γ (°) 104.755, 104.755, 94.305, 90.00, 90.00, 120.00
R / Rfree (%) 17.6 / 19.3

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Apo Pseudomonas Aeruginosa Lpxd Structure (pdb code 6ued). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Apo Pseudomonas Aeruginosa Lpxd Structure, PDB code: 6ued:

Magnesium binding site 1 out of 1 in 6ued

Go back to Magnesium Binding Sites List in 6ued
Magnesium binding site 1 out of 1 in the Apo Pseudomonas Aeruginosa Lpxd Structure


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Apo Pseudomonas Aeruginosa Lpxd Structure within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg403

b:7.1
occ:0.33
O A:HOH596 2.1 8.4 1.0
O A:HOH691 2.1 8.1 1.0
O A:HOH673 4.1 7.0 0.3
O A:HOH514 4.2 11.5 0.3
O A:CYS255 4.3 7.4 1.0
O A:HOH526 4.3 13.2 0.7
O A:HOH611 4.4 16.4 1.0
O A:HOH581 4.4 10.6 0.7
CB A:CYS255 4.5 6.9 1.0

Reference:

K.G.Kroeck, M.D.Sacco, E.W.Smith, X.Zhang, D.Shoun, A.Akhtar, S.E.Darch, F.Cohen, L.D.Andrews, J.E.Knox, Y.Chen. Discovery of Dual-Activity Small-Molecule Ligands of Pseudomonas Aeruginosa Lpxa and Lpxd Using Spr and X-Ray Crystallography. Sci Rep V. 9 15450 2019.
ISSN: ESSN 2045-2322
PubMed: 31664082
DOI: 10.1038/S41598-019-51844-Z
Page generated: Tue Oct 1 20:59:04 2024

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