Magnesium in PDB 6uhc: Cryoem Structure of Human ARP2/3 Complex with Bound Npfs

The binding sites of Magnesium atom in the Cryoem Structure of Human ARP2/3 Complex with Bound Npfs (pdb code 6uhc). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Cryoem Structure of Human ARP2/3 Complex with Bound Npfs, PDB code: 6uhc:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Cryoem Structure of Human ARP2/3 Complex with Bound Npfs


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryoem Structure of Human ARP2/3 Complex with Bound Npfs within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg501 b:30.0 occ:1.00 O1B A:ATP502 2.6 70.5 1.0 O2G A:ATP502 2.6 67.0 1.0 NE2 A:GLN144 3.3 68.3 1.0 OD2 A:ASP11 3.3 82.8 1.0 OD1 A:ASP11 3.6 79.5 1.0 OE1 A:GLN144 3.7 70.7 1.0 PG A:ATP502 3.8 62.4 1.0 CD A:GLN144 3.9 68.5 1.0 CG A:ASP11 3.9 78.4 1.0 O3G A:ATP502 3.9 65.5 1.0 PB A:ATP502 4.0 66.4 1.0 NZ A:LYS18 4.1 70.0 1.0 O3B A:ATP502 4.3 64.4 1.0 O1A A:ATP502 4.5 66.4 1.0 O3A A:ATP502 4.6 67.2 1.0 CA A:GLY13 4.7 72.0 1.0 CG2 A:VAL377 4.7 71.6 1.0 OD2 A:ASP169 4.7 0.4 1.0 OD1 A:ASP169 4.8 0.7 1.0

Magnesium binding site 2 out of 2 in the Cryoem Structure of Human ARP2/3 Complex with Bound Npfs


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryoem Structure of Human ARP2/3 Complex with Bound Npfs within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg501 b:30.0 occ:1.00 O1B B:ATP502 2.6 80.2 1.0 O2G B:ATP502 2.7 90.4 1.0 NE2 B:GLN141 3.1 86.7 1.0 O3G B:ATP502 3.2 95.3 1.0 PG B:ATP502 3.5 91.0 1.0 PB B:ATP502 3.9 78.6 1.0 O1A B:ATP502 4.2 71.8 1.0 O3B B:ATP502 4.2 84.6 1.0 CD B:GLN141 4.4 86.3 1.0 O3A B:ATP502 4.6 75.3 1.0 CA B:GLY14 4.8 95.3 1.0 PA B:ATP502 4.9 71.9 1.0 OE1 B:GLN141 4.9 87.8 1.0 O1G B:ATP502 4.9 85.6 1.0

A.Zimmet, T.Van Eeuwen, M.Boczkowska, G.Rebowski, K.Murakami, R.Dominguez. Cryo-Em Structure of Npf-Bound Human ARP2/3 Complex and Activation Mechanism. Sci Adv V. 6 Z7651 2020.
ISSN: ESSN 2375-2548
PubMed: 32548263
DOI: 10.1126/SCIADV.AAZ7651