Atomistry » Magnesium » PDB 6ufg-6uok » 6uja
Atomistry »
  Magnesium »
    PDB 6ufg-6uok »
      6uja »

Magnesium in PDB 6uja: Integrin Alpha-V Beta-8 in Complex with Pro-Tgf-BETA1

Other elements in 6uja:

The structure of Integrin Alpha-V Beta-8 in Complex with Pro-Tgf-BETA1 also contains other interesting chemical elements:

Calcium (Ca) 5 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Integrin Alpha-V Beta-8 in Complex with Pro-Tgf-BETA1 (pdb code 6uja). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Integrin Alpha-V Beta-8 in Complex with Pro-Tgf-BETA1, PDB code: 6uja:

Magnesium binding site 1 out of 1 in 6uja

Go back to Magnesium Binding Sites List in 6uja
Magnesium binding site 1 out of 1 in the Integrin Alpha-V Beta-8 in Complex with Pro-Tgf-BETA1


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Integrin Alpha-V Beta-8 in Complex with Pro-Tgf-BETA1 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg2002

b:25.2
occ:1.00
OD1 D:ASP217 1.8 25.9 1.0
OE2 B:GLU212 1.8 23.7 1.0
OG B:SER114 2.0 24.2 1.0
OG B:SER116 2.3 25.9 1.0
CB B:SER114 2.9 24.0 1.0
CD B:GLU212 2.9 22.9 1.0
CG D:ASP217 2.9 26.5 1.0
CB B:SER116 3.3 26.6 1.0
OD2 D:ASP217 3.7 25.7 1.0
CG B:GLU212 3.7 22.8 1.0
OE1 B:GLU212 3.7 23.1 1.0
N B:SER116 3.8 26.9 1.0
CB D:ASP217 3.9 26.7 1.0
CA B:SER114 4.1 26.1 1.0
CA B:SER116 4.1 26.6 1.0
C B:SER114 4.2 26.9 1.0
N B:ALA115 4.3 26.4 1.0
O B:THR210 4.3 23.2 1.0
OD1 B:ASP112 4.4 24.1 1.0
CA D:ASP217 4.4 27.1 1.0
OD2 B:ASP112 4.4 22.9 1.0
OD1 B:ASP243 4.6 24.9 1.0
O B:SER114 4.7 25.9 1.0
OD2 B:ASP243 4.7 25.6 1.0
ND2 B:ASN207 4.7 23.7 1.0
CG B:ASP112 4.8 23.8 1.0
N B:SER114 4.9 24.7 1.0
C B:ALA115 4.9 29.8 1.0
O D:ASP217 4.9 30.3 1.0
C B:SER116 4.9 27.8 1.0
N B:MET117 5.0 28.1 1.0

Reference:

M.G.Campbell, A.Cormier, S.Ito, R.I.Seed, A.J.Bondesson, J.Lou, J.D.Marks, J.L.Baron, Y.Cheng, S.L.Nishimura. Cryo-Em Reveals Integrin-Mediated Tgf-Beta Activation Without Release From Latent Tgf-Beta. Cell 2020.
ISSN: ISSN 1097-4172
PubMed: 31955848
DOI: 10.1016/J.CELL.2019.12.030
Page generated: Tue Oct 1 21:05:11 2024

Last articles

Zn in 1E87
Zn in 1E67
Zn in 1E72
Zn in 1E71
Zn in 1E70
Zn in 1E4U
Zn in 1E6S
Zn in 1E6X
Zn in 1E51
Zn in 1E6Q
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy