Magnesium in PDB 6ujc: Integrin Alpha-V Beta-8 in Complex with the Fabs C6-RGD3 and 11D12V2

The structure of Integrin Alpha-V Beta-8 in Complex with the Fabs C6-RGD3 and 11D12V2 also contains other interesting chemical elements:

Calcium

(Ca)

5 atoms

The binding sites of Magnesium atom in the Integrin Alpha-V Beta-8 in Complex with the Fabs C6-RGD3 and 11D12V2 (pdb code 6ujc). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Integrin Alpha-V Beta-8 in Complex with the Fabs C6-RGD3 and 11D12V2, PDB code: 6ujc:

Magnesium binding site 1 out of 1 in the Integrin Alpha-V Beta-8 in Complex with the Fabs C6-RGD3 and 11D12V2


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Integrin Alpha-V Beta-8 in Complex with the Fabs C6-RGD3 and 11D12V2 within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg2002 b:50.7 occ:1.00 OE2 B:GLU212 1.8 51.7 1.0 OD1 F:ASP34 1.9 52.4 1.0 OD2 F:ASP34 1.9 51.8 1.0 OG B:SER114 2.0 50.5 1.0 CG F:ASP34 2.2 52.4 1.0 CB B:SER114 2.8 50.5 1.0 CD B:GLU212 2.9 51.8 1.0 OE1 B:GLU212 3.7 51.3 1.0 CB F:ASP34 3.7 52.4 1.0 O B:THR210 3.8 53.4 1.0 CG B:GLU212 3.8 51.4 1.0 OG B:SER116 4.0 50.8 1.0 CA B:SER114 4.1 48.8 1.0 ND2 B:ASN207 4.2 52.4 1.0 O F:ASP34 4.3 53.3 1.0 C B:SER114 4.4 49.0 1.0 OD1 B:ASN207 4.4 51.4 1.0 OD2 B:ASP112 4.5 50.1 1.0 OD1 B:ASP112 4.5 49.6 1.0 CG B:GLN244 4.6 52.5 1.0 N B:ALA115 4.7 49.6 1.0 CA F:ASP34 4.7 52.6 1.0 CG B:ASN207 4.8 51.7 1.0 N B:SER116 4.8 50.6 1.0 C B:THR210 4.8 52.5 1.0 N B:SER114 4.9 49.0 1.0 O B:SER114 4.9 50.8 1.0 CB B:SER116 4.9 51.1 1.0 CG B:ASP112 4.9 49.8 1.0 C F:ASP34 5.0 53.1 1.0

M.G.Campbell, A.Cormier, S.Ito, R.I.Seed, A.J.Bondesson, J.Lou, J.D.Marks, J.L.Baron, Y.Cheng, S.L.Nishimura. Cryo-Em Reveals Integrin-Mediated Tgf-Beta Activation Without Release From Latent Tgf-Beta. Cell 2020.
ISSN: ISSN 1097-4172
PubMed: 31955848
DOI: 10.1016/J.CELL.2019.12.030