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Magnesium in PDB 6uka: Crystal Structure of Rhog and Elmo Complex

Protein crystallography data

The structure of Crystal Structure of Rhog and Elmo Complex, PDB code: 6uka was solved by C.H.Jo, R.C.Killoran, M.J.Smith, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 27.01 / 2.40
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 100.279, 40.060, 73.930, 90.00, 119.71, 90.00
R / Rfree (%) 18.6 / 23.7

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Rhog and Elmo Complex (pdb code 6uka). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of Rhog and Elmo Complex, PDB code: 6uka:

Magnesium binding site 1 out of 1 in 6uka

Go back to Magnesium Binding Sites List in 6uka
Magnesium binding site 1 out of 1 in the Crystal Structure of Rhog and Elmo Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Rhog and Elmo Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg202

b:16.8
occ:1.00
HOB2 A:GNP201 1.6 19.6 1.0
O1G A:GNP201 1.9 15.1 1.0
O2B A:GNP201 1.9 16.4 1.0
OG1 A:THR17 2.0 14.1 1.0
O A:HOH314 2.1 16.6 1.0
O A:HOH317 2.1 10.7 1.0
OG1 A:THR35 2.7 16.1 1.0
PG A:GNP201 3.0 17.1 1.0
PB A:GNP201 3.0 12.2 1.0
CB A:THR35 3.2 13.3 1.0
CB A:THR17 3.2 14.4 1.0
N3B A:GNP201 3.2 13.4 1.0
HOG2 A:GNP201 3.6 15.9 1.0
N A:THR17 3.8 14.1 1.0
O2G A:GNP201 3.9 13.2 1.0
HNB3 A:GNP201 3.9 16.1 1.0
O1B A:GNP201 4.0 13.7 1.0
CA A:THR17 4.0 12.6 1.0
N A:THR35 4.1 17.1 1.0
O2A A:GNP201 4.1 13.8 1.0
OD2 A:ASP57 4.1 17.7 1.0
O3G A:GNP201 4.2 13.7 1.0
OD1 A:ASP57 4.2 15.8 1.0
CA A:THR35 4.2 15.7 1.0
CG2 A:THR35 4.2 10.9 1.0
O3A A:GNP201 4.2 11.0 1.0
O A:THR58 4.3 12.9 1.0
CG2 A:THR17 4.3 9.5 1.0
CG A:ASP57 4.6 18.8 1.0
PA A:GNP201 4.6 10.1 1.0
O A:ILE33 4.7 17.4 1.0
CB A:LYS16 4.7 17.2 1.0
C A:LYS16 4.7 13.3 1.0
O1A A:GNP201 4.7 10.6 1.0
HOG3 A:GNP201 4.8 16.4 1.0
NZ A:LYS16 4.8 12.5 1.0
CE A:LYS16 4.8 14.3 1.0
O A:HOH371 4.9 20.3 1.0
C A:PRO34 5.0 16.7 1.0

Reference:

L.Chang, J.Yang, C.H.Jo, A.Boland, Z.Zhang, S.H.Mclaughlin, A.Abu-Thuraia, R.C.Killoran, M.J.Smith, J.F.Cote, D.Barford. Structure of the DOCK2-ELMO1 Complex Provides Insights Into Regulation of the Auto-Inhibited State. Nat Commun V. 11 3464 2020.
ISSN: ESSN 2041-1723
PubMed: 32651375
DOI: 10.1038/S41467-020-17271-9
Page generated: Tue Oct 1 21:06:24 2024

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