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Magnesium in PDB 6uks: Atpgammas Bound MBCS1

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Atpgammas Bound MBCS1 (pdb code 6uks). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 7 binding sites of Magnesium where determined in the Atpgammas Bound MBCS1, PDB code: 6uks:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7;

Magnesium binding site 1 out of 7 in 6uks

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Magnesium binding site 1 out of 7 in the Atpgammas Bound MBCS1


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Atpgammas Bound MBCS1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg801

b:45.6
occ:1.00
O2B B:AGS800 2.0 59.3 1.0
HOG2 B:AGS800 2.1 59.3 1.0
OG A:SER237 2.4 56.4 1.0
O2G B:AGS800 2.5 59.3 1.0
HB2 A:SER237 3.3 56.4 1.0
O2A B:AGS800 3.4 59.3 1.0
CB A:SER237 3.4 56.4 1.0
PB B:AGS800 3.5 59.3 1.0
OE2 A:GLU282 3.7 63.2 1.0
H A:SER237 3.9 56.4 1.0
PG B:AGS800 3.9 59.3 1.0
HB3 A:SER237 3.9 56.4 1.0
OD1 B:ASN314 4.1 62.8 1.0
HA2 B:GLY318 4.1 60.5 1.0
OE1 A:GLU282 4.2 63.2 1.0
O3B B:AGS800 4.2 59.3 1.0
O1B B:AGS800 4.2 59.3 1.0
PA B:AGS800 4.3 59.3 1.0
CD A:GLU282 4.3 63.2 1.0
O3A B:AGS800 4.4 59.3 1.0
O1A B:AGS800 4.5 59.3 1.0
N A:SER237 4.5 56.4 1.0
HB2 A:LYS236 4.5 57.2 1.0
CA A:SER237 4.6 56.4 1.0
O3G B:AGS800 4.7 59.3 1.0
O B:ASP317 4.7 61.6 1.0
HE2 A:LYS236 4.8 57.2 1.0
HH21 B:ARG343 4.8 58.5 1.0
HH22 B:ARG343 4.9 58.5 1.0
HA A:SER237 4.9 56.4 1.0
HG1 A:THR330 5.0 60.3 1.0

Magnesium binding site 2 out of 7 in 6uks

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Magnesium binding site 2 out of 7 in the Atpgammas Bound MBCS1


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Atpgammas Bound MBCS1 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg801

b:48.7
occ:1.00
O2B C:AGS800 2.0 60.1 1.0
HOG2 C:AGS800 2.1 60.1 1.0
OG B:SER237 2.4 56.1 1.0
O2G C:AGS800 2.5 60.1 1.0
HB2 B:SER237 3.3 56.1 1.0
O2A C:AGS800 3.4 60.1 1.0
CB B:SER237 3.4 56.1 1.0
PB C:AGS800 3.5 60.1 1.0
OE2 B:GLU282 3.7 63.0 1.0
H B:SER237 3.9 56.1 1.0
PG C:AGS800 3.9 60.1 1.0
HB3 B:SER237 3.9 56.1 1.0
OD1 C:ASN314 4.1 62.5 1.0
HA2 C:GLY318 4.1 59.1 1.0
OE1 B:GLU282 4.2 63.0 1.0
O3B C:AGS800 4.2 60.1 1.0
O1B C:AGS800 4.2 60.1 1.0
PA C:AGS800 4.3 60.1 1.0
CD B:GLU282 4.3 63.0 1.0
O3A C:AGS800 4.4 60.1 1.0
O1A C:AGS800 4.5 60.1 1.0
N B:SER237 4.5 56.1 1.0
HB2 B:LYS236 4.5 57.1 1.0
CA B:SER237 4.6 56.1 1.0
O3G C:AGS800 4.7 60.1 1.0
O C:ASP317 4.8 61.2 1.0
HE2 B:LYS236 4.8 57.1 1.0
HH21 C:ARG343 4.8 57.8 1.0
HA B:SER237 4.9 56.1 1.0
HH22 C:ARG343 5.0 57.8 1.0
HG1 B:THR330 5.0 59.8 1.0

Magnesium binding site 3 out of 7 in 6uks

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Magnesium binding site 3 out of 7 in the Atpgammas Bound MBCS1


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Atpgammas Bound MBCS1 within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg801

b:48.8
occ:1.00
O2B D:AGS800 2.0 59.3 1.0
HOG2 D:AGS800 2.1 59.3 1.0
OG C:SER237 2.4 55.6 1.0
O2G D:AGS800 2.5 59.3 1.0
HB2 C:SER237 3.3 55.6 1.0
O2A D:AGS800 3.4 59.3 1.0
CB C:SER237 3.4 55.6 1.0
PB D:AGS800 3.5 59.3 1.0
OE2 C:GLU282 3.7 62.4 1.0
H C:SER237 3.9 55.6 1.0
PG D:AGS800 3.9 59.3 1.0
HB3 C:SER237 3.9 55.6 1.0
OD1 D:ASN314 4.1 63.1 1.0
HA2 D:GLY318 4.2 60.5 1.0
OE1 C:GLU282 4.2 62.4 1.0
O3B D:AGS800 4.2 59.3 1.0
O1B D:AGS800 4.2 59.3 1.0
PA D:AGS800 4.3 59.3 1.0
CD C:GLU282 4.3 62.4 1.0
O3A D:AGS800 4.4 59.3 1.0
O1A D:AGS800 4.5 59.3 1.0
N C:SER237 4.5 55.6 1.0
HB2 C:LYS236 4.5 56.4 1.0
CA C:SER237 4.6 55.6 1.0
O3G D:AGS800 4.7 59.3 1.0
O D:ASP317 4.8 62.1 1.0
HH21 D:ARG343 4.8 58.0 1.0
HE2 C:LYS236 4.8 56.4 1.0
HH22 D:ARG343 4.9 58.0 1.0
HA C:SER237 4.9 55.6 1.0
HG1 C:THR330 5.0 59.3 1.0

Magnesium binding site 4 out of 7 in 6uks

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Magnesium binding site 4 out of 7 in the Atpgammas Bound MBCS1


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Atpgammas Bound MBCS1 within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg801

b:49.0
occ:1.00
O2B E:AGS800 2.0 59.6 1.0
HOG2 E:AGS800 2.1 59.6 1.0
OG D:SER237 2.4 55.9 1.0
O2G E:AGS800 2.5 59.6 1.0
HB2 D:SER237 3.3 55.9 1.0
O2A E:AGS800 3.4 59.6 1.0
CB D:SER237 3.4 55.9 1.0
PB E:AGS800 3.5 59.6 1.0
OE2 D:GLU282 3.7 62.9 1.0
H D:SER237 3.9 55.9 1.0
PG E:AGS800 3.9 59.6 1.0
HB3 D:SER237 3.9 55.9 1.0
OD1 E:ASN314 4.1 62.1 1.0
HA2 E:GLY318 4.1 60.0 1.0
OE1 D:GLU282 4.2 62.9 1.0
O3B E:AGS800 4.2 59.6 1.0
O1B E:AGS800 4.2 59.6 1.0
PA E:AGS800 4.3 59.6 1.0
CD D:GLU282 4.3 62.9 1.0
O3A E:AGS800 4.4 59.6 1.0
O1A E:AGS800 4.5 59.6 1.0
N D:SER237 4.5 55.9 1.0
HB2 D:LYS236 4.5 56.7 1.0
CA D:SER237 4.6 55.9 1.0
O3G E:AGS800 4.7 59.6 1.0
O E:ASP317 4.7 61.7 1.0
HE2 D:LYS236 4.8 56.7 1.0
HH21 E:ARG343 4.8 59.0 1.0
HH22 E:ARG343 4.9 59.0 1.0
HA D:SER237 4.9 55.9 1.0
HG1 D:THR330 5.0 59.7 1.0

Magnesium binding site 5 out of 7 in 6uks

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Magnesium binding site 5 out of 7 in the Atpgammas Bound MBCS1


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Atpgammas Bound MBCS1 within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Mg801

b:49.5
occ:1.00
O2B F:AGS800 2.0 60.2 1.0
HOG2 F:AGS800 2.1 60.2 1.0
OG E:SER237 2.4 56.7 1.0
O2G F:AGS800 2.5 60.2 1.0
HB2 E:SER237 3.3 56.7 1.0
O2A F:AGS800 3.4 60.2 1.0
CB E:SER237 3.4 56.7 1.0
PB F:AGS800 3.5 60.2 1.0
OE2 E:GLU282 3.7 62.6 1.0
H E:SER237 3.9 56.7 1.0
PG F:AGS800 3.9 60.2 1.0
HB3 E:SER237 3.9 56.7 1.0
OD1 F:ASN314 4.1 62.6 1.0
HA2 F:GLY318 4.1 60.7 1.0
OE1 E:GLU282 4.2 62.6 1.0
O3B F:AGS800 4.2 60.2 1.0
O1B F:AGS800 4.2 60.2 1.0
PA F:AGS800 4.3 60.2 1.0
CD E:GLU282 4.3 62.6 1.0
O3A F:AGS800 4.4 60.2 1.0
O1A F:AGS800 4.5 60.2 1.0
N E:SER237 4.5 56.7 1.0
HB2 E:LYS236 4.5 57.1 1.0
CA E:SER237 4.6 56.7 1.0
O3G F:AGS800 4.7 60.2 1.0
O F:ASP317 4.8 61.7 1.0
HE2 E:LYS236 4.8 57.1 1.0
HH21 F:ARG343 4.8 58.9 1.0
HH22 F:ARG343 4.9 58.9 1.0
HA E:SER237 4.9 56.7 1.0
HG1 E:THR330 5.0 60.1 1.0

Magnesium binding site 6 out of 7 in 6uks

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Magnesium binding site 6 out of 7 in the Atpgammas Bound MBCS1


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Atpgammas Bound MBCS1 within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Mg801

b:46.8
occ:1.00
O2B G:AGS800 2.0 58.8 1.0
HOG2 G:AGS800 2.1 58.8 1.0
OG F:SER237 2.4 55.4 1.0
O2G G:AGS800 2.5 58.8 1.0
HB2 F:SER237 3.3 55.4 1.0
O2A G:AGS800 3.4 58.8 1.0
CB F:SER237 3.4 55.4 1.0
PB G:AGS800 3.5 58.8 1.0
OE2 F:GLU282 3.7 63.6 1.0
H F:SER237 3.9 55.4 1.0
PG G:AGS800 3.9 58.8 1.0
HB3 F:SER237 3.9 55.4 1.0
HA2 G:GLY318 4.1 60.2 1.0
OD1 G:ASN314 4.1 63.0 1.0
OE1 F:GLU282 4.2 63.6 1.0
O3B G:AGS800 4.2 58.8 1.0
O1B G:AGS800 4.2 58.8 1.0
PA G:AGS800 4.3 58.8 1.0
CD F:GLU282 4.3 63.6 1.0
O3A G:AGS800 4.4 58.8 1.0
O1A G:AGS800 4.5 58.8 1.0
N F:SER237 4.5 55.4 1.0
HB2 F:LYS236 4.5 56.7 1.0
CA F:SER237 4.6 55.4 1.0
O3G G:AGS800 4.7 58.8 1.0
O G:ASP317 4.7 61.3 1.0
HE2 F:LYS236 4.8 56.7 1.0
HH21 G:ARG343 4.8 57.8 1.0
HH22 G:ARG343 4.9 57.8 1.0
HA F:SER237 4.9 55.4 1.0
HG1 F:THR330 5.0 60.4 1.0

Magnesium binding site 7 out of 7 in 6uks

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Magnesium binding site 7 out of 7 in the Atpgammas Bound MBCS1


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Atpgammas Bound MBCS1 within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Mg801

b:49.9
occ:1.00
O2B A:AGS802 2.0 58.9 1.0
HOG2 A:AGS802 2.1 58.9 1.0
OG G:SER237 2.4 55.6 1.0
O2G A:AGS802 2.5 58.9 1.0
HB2 G:SER237 3.3 55.6 1.0
O2A A:AGS802 3.4 58.9 1.0
CB G:SER237 3.4 55.6 1.0
PB A:AGS802 3.5 58.9 1.0
OE2 G:GLU282 3.7 62.7 1.0
H G:SER237 3.9 55.6 1.0
PG A:AGS802 3.9 58.9 1.0
HB3 G:SER237 3.9 55.6 1.0
HA2 A:GLY318 4.0 60.5 1.0
OD1 A:ASN314 4.1 62.9 1.0
OE1 G:GLU282 4.2 62.7 1.0
O3B A:AGS802 4.2 58.9 1.0
O1B A:AGS802 4.2 58.9 1.0
PA A:AGS802 4.3 58.9 1.0
CD G:GLU282 4.3 62.7 1.0
O3A A:AGS802 4.4 58.9 1.0
O1A A:AGS802 4.5 58.9 1.0
N G:SER237 4.5 55.6 1.0
HB2 G:LYS236 4.5 56.4 1.0
CA G:SER237 4.6 55.6 1.0
O3G A:AGS802 4.7 58.9 1.0
O A:ASP317 4.7 62.0 1.0
HE2 G:LYS236 4.8 56.4 1.0
HH21 A:ARG343 4.8 58.4 1.0
HH22 A:ARG343 4.9 58.4 1.0
HA G:SER237 4.9 55.6 1.0
HG1 G:THR330 5.0 59.2 1.0
CA A:GLY318 5.0 60.5 1.0

Reference:

W.K.Tang, M.J.Borgnia, A.L.Hsu, D.Xia. Structures of Aaa Protein Translocase BCS1 Suggest Translocation Mechanism of A Folded Protein Nat.Struct.Mol.Biol. 2020.
ISSN: ESSN 1545-9985
Page generated: Tue Oct 1 21:06:47 2024

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