Magnesium in PDB 6up4: Crystal Structure of the Murine DHX36 Helicase in Complex with Adp

The structure of Crystal Structure of the Murine DHX36 Helicase in Complex with Adp, PDB code: 6up4 was solved by Z.Liu, T.S.Xiao, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	46.83 / 2.40
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	66.160, 115.930, 132.570, 90.00, 90.00, 90.00
R / Rfree (%)	18.6 / 23.6

The binding sites of Magnesium atom in the Crystal Structure of the Murine DHX36 Helicase in Complex with Adp (pdb code 6up4). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of the Murine DHX36 Helicase in Complex with Adp, PDB code: 6up4:

Magnesium binding site 1 out of 1 in the Crystal Structure of the Murine DHX36 Helicase in Complex with Adp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of the Murine DHX36 Helicase in Complex with Adp within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1002 b:46.9 occ:1.00 OE2 A:GLU327 2.1 69.5 1.0 OG1 A:THR229 2.1 48.1 1.0 O A:HOH1106 2.1 41.9 1.0 O A:HOH1167 2.2 39.5 1.0 O A:HOH1133 2.2 51.4 1.0 O3B A:ADP1001 2.3 49.9 1.0 CD A:GLU327 3.0 73.3 1.0 OE1 A:GLU327 3.2 72.2 1.0 CB A:THR229 3.4 46.0 1.0 PB A:ADP1001 3.5 60.4 1.0 O2B A:ADP1001 3.6 52.6 1.0 OD1 A:ASP326 4.0 51.1 1.0 OD2 A:ASP326 4.0 50.5 1.0 O A:THR548 4.2 70.9 1.0 CG2 A:THR229 4.2 34.4 1.0 N A:THR229 4.3 38.8 1.0 CG A:GLU327 4.3 62.3 1.0 CG A:ASP326 4.4 56.2 1.0 CA A:THR229 4.4 34.6 1.0 O2A A:ADP1001 4.4 57.5 1.0 O A:SER549 4.5 77.1 1.0 O A:HOH1235 4.5 73.2 1.0 O3A A:ADP1001 4.5 59.0 1.0 CA A:SER549 4.6 66.8 1.0 O1B A:ADP1001 4.6 67.4 1.0 O A:HOH1151 4.7 67.3 1.0 CE A:LYS228 4.9 48.3 1.0 PA A:ADP1001 5.0 55.0 1.0

S.Srinivasan, Z.Liu, W.Chuenchor, T.S.Xiao, E.Jankowsky. Function of Auxiliary Domains of the Deah/Rha Helicase DHX36 in Rna Remodeling. J.Mol.Biol. 2020.
ISSN: ESSN 1089-8638
PubMed: 32087197
DOI: 10.1016/J.JMB.2020.02.005