Magnesium in PDB 6upw: Metavinculin Abd-F-Actin Complex

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Metavinculin Abd-F-Actin Complex (pdb code 6upw). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 5 binding sites of Magnesium where determined in the Metavinculin Abd-F-Actin Complex, PDB code: 6upw:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5;

Magnesium binding site 1 out of 5 in 6upw

Go back to Magnesium Binding Sites List in 6upw
Magnesium binding site 1 out of 5 in the Metavinculin Abd-F-Actin Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Metavinculin Abd-F-Actin Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg402

b:36.0
occ:1.00
O3B C:ADP401 1.9 48.4 1.0
PB C:ADP401 3.4 48.4 1.0
OE1 C:GLN137 3.9 40.1 1.0
O1B C:ADP401 4.1 48.4 1.0
O2A C:ADP401 4.1 48.4 1.0
CD C:GLN137 4.1 40.1 1.0
NE2 C:GLN137 4.1 40.1 1.0
O2B C:ADP401 4.2 48.4 1.0
O3A C:ADP401 4.3 48.4 1.0
OD1 C:ASP154 4.3 34.0 1.0
OD2 C:ASP11 4.4 42.5 1.0
NZ C:LYS18 4.5 37.1 1.0
OD1 C:ASP11 4.6 42.5 1.0
CA C:GLY13 4.6 40.0 1.0
PA C:ADP401 4.7 48.4 1.0
CG2 C:VAL339 4.8 36.4 1.0
CA C:GLY156 4.8 34.1 1.0
CG C:ASP11 4.9 42.5 1.0

Magnesium binding site 2 out of 5 in 6upw

Go back to Magnesium Binding Sites List in 6upw
Magnesium binding site 2 out of 5 in the Metavinculin Abd-F-Actin Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Metavinculin Abd-F-Actin Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg402

b:37.6
occ:1.00
O3B B:ADP401 2.0 48.4 1.0
PB B:ADP401 3.5 48.4 1.0
OD2 B:ASP11 3.9 43.1 1.0
O2A B:ADP401 3.9 48.4 1.0
OE1 B:GLN137 4.0 39.0 1.0
O1B B:ADP401 4.1 48.4 1.0
NE2 B:GLN137 4.2 39.0 1.0
CD B:GLN137 4.2 39.0 1.0
O2B B:ADP401 4.3 48.4 1.0
OD1 B:ASP11 4.3 43.1 1.0
O3A B:ADP401 4.4 48.4 1.0
OD1 B:ASP154 4.5 35.0 1.0
CG B:ASP11 4.5 43.1 1.0
CA B:GLY13 4.5 39.7 1.0
NZ B:LYS18 4.6 35.4 1.0
PA B:ADP401 4.7 48.4 1.0
CG2 B:VAL339 4.8 35.5 1.0

Magnesium binding site 3 out of 5 in 6upw

Go back to Magnesium Binding Sites List in 6upw
Magnesium binding site 3 out of 5 in the Metavinculin Abd-F-Actin Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Metavinculin Abd-F-Actin Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg402

b:38.2
occ:1.00
O3B A:ADP401 2.2 48.4 1.0
OE1 A:GLN137 3.4 42.4 1.0
PB A:ADP401 3.5 48.4 1.0
O1B A:ADP401 3.9 48.4 1.0
O2A A:ADP401 4.0 48.4 1.0
CD A:GLN137 4.1 42.4 1.0
OD2 A:ASP11 4.3 46.3 1.0
NE2 A:GLN137 4.3 42.4 1.0
O2B A:ADP401 4.3 48.4 1.0
OD1 A:ASP11 4.4 46.3 1.0
CA A:GLY13 4.5 41.2 1.0
OD1 A:ASP154 4.5 39.1 1.0
O3A A:ADP401 4.5 48.4 1.0
NZ A:LYS18 4.5 40.5 1.0
CG2 A:VAL339 4.8 40.9 1.0
CG A:ASP11 4.8 46.3 1.0
PA A:ADP401 4.8 48.4 1.0
CA A:GLY156 5.0 36.9 1.0

Magnesium binding site 4 out of 5 in 6upw

Go back to Magnesium Binding Sites List in 6upw
Magnesium binding site 4 out of 5 in the Metavinculin Abd-F-Actin Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Metavinculin Abd-F-Actin Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg402

b:34.2
occ:1.00
O2B D:ADP401 2.1 48.4 1.0
PB D:ADP401 3.4 48.4 1.0
O3B D:ADP401 3.7 48.4 1.0
OE1 D:GLN137 3.8 38.5 1.0
O2A D:ADP401 4.1 48.4 1.0
CD D:GLN137 4.1 38.5 1.0
OD2 D:ASP11 4.2 44.1 1.0
NE2 D:GLN137 4.2 38.5 1.0
O1B D:ADP401 4.3 48.4 1.0
OD1 D:ASP154 4.4 32.4 1.0
OD1 D:ASP11 4.4 44.1 1.0
CA D:GLY13 4.5 42.8 1.0
O3A D:ADP401 4.5 48.4 1.0
NZ D:LYS18 4.6 38.7 1.0
CG D:ASP11 4.7 44.1 1.0
CG2 D:VAL339 4.8 36.1 1.0
PA D:ADP401 4.9 48.4 1.0
CA D:GLY156 5.0 34.0 1.0

Magnesium binding site 5 out of 5 in 6upw

Go back to Magnesium Binding Sites List in 6upw
Magnesium binding site 5 out of 5 in the Metavinculin Abd-F-Actin Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Metavinculin Abd-F-Actin Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Mg402

b:38.2
occ:1.00
O3B E:ADP401 2.0 44.9 1.0
PB E:ADP401 3.5 44.9 1.0
OE1 E:GLN137 3.6 46.4 1.0
O2A E:ADP401 3.9 44.9 1.0
O1B E:ADP401 4.1 44.9 1.0
O2B E:ADP401 4.2 44.9 1.0
OD1 E:ASP154 4.2 39.7 1.0
CD E:GLN137 4.2 46.4 1.0
OD2 E:ASP11 4.3 52.9 1.0
NE2 E:GLN137 4.4 46.4 1.0
O3A E:ADP401 4.4 44.9 1.0
CA E:GLY156 4.6 38.5 1.0
NZ E:LYS18 4.6 48.4 1.0
OD1 E:ASP11 4.7 52.9 1.0
PA E:ADP401 4.7 44.9 1.0
CA E:GLY13 4.7 48.5 1.0
CG2 E:VAL339 4.8 46.1 1.0
CG E:ASP11 4.9 52.9 1.0

Reference:

L.Mei, S.Espinosa De Los Reyes, M.J.Reynolds, R.Leicher, S.Liu, G.M.Alushin. Molecular Mechanism For Direct Actin Force-Sensing By Alpha-Catenin. Elife V. 9 2020.
ISSN: ESSN 2050-084X
PubMed: 32969337
DOI: 10.7554/ELIFE.62514
Page generated: Tue Dec 15 01:03:31 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy