Magnesium in PDB 6upw: Metavinculin Abd-F-Actin Complex

The binding sites of Magnesium atom in the Metavinculin Abd-F-Actin Complex (pdb code 6upw). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 5 binding sites of Magnesium where determined in the Metavinculin Abd-F-Actin Complex, PDB code: 6upw:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5;

Magnesium binding site 1 out of 5 in the Metavinculin Abd-F-Actin Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Metavinculin Abd-F-Actin Complex within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg402 b:36.0 occ:1.00 O3B C:ADP401 1.9 48.4 1.0 PB C:ADP401 3.4 48.4 1.0 OE1 C:GLN137 3.9 40.1 1.0 O1B C:ADP401 4.1 48.4 1.0 O2A C:ADP401 4.1 48.4 1.0 CD C:GLN137 4.1 40.1 1.0 NE2 C:GLN137 4.1 40.1 1.0 O2B C:ADP401 4.2 48.4 1.0 O3A C:ADP401 4.3 48.4 1.0 OD1 C:ASP154 4.3 34.0 1.0 OD2 C:ASP11 4.4 42.5 1.0 NZ C:LYS18 4.5 37.1 1.0 OD1 C:ASP11 4.6 42.5 1.0 CA C:GLY13 4.6 40.0 1.0 PA C:ADP401 4.7 48.4 1.0 CG2 C:VAL339 4.8 36.4 1.0 CA C:GLY156 4.8 34.1 1.0 CG C:ASP11 4.9 42.5 1.0

Magnesium binding site 2 out of 5 in the Metavinculin Abd-F-Actin Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Metavinculin Abd-F-Actin Complex within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg402 b:37.6 occ:1.00 O3B B:ADP401 2.0 48.4 1.0 PB B:ADP401 3.5 48.4 1.0 OD2 B:ASP11 3.9 43.1 1.0 O2A B:ADP401 3.9 48.4 1.0 OE1 B:GLN137 4.0 39.0 1.0 O1B B:ADP401 4.1 48.4 1.0 NE2 B:GLN137 4.2 39.0 1.0 CD B:GLN137 4.2 39.0 1.0 O2B B:ADP401 4.3 48.4 1.0 OD1 B:ASP11 4.3 43.1 1.0 O3A B:ADP401 4.4 48.4 1.0 OD1 B:ASP154 4.5 35.0 1.0 CG B:ASP11 4.5 43.1 1.0 CA B:GLY13 4.5 39.7 1.0 NZ B:LYS18 4.6 35.4 1.0 PA B:ADP401 4.7 48.4 1.0 CG2 B:VAL339 4.8 35.5 1.0

Magnesium binding site 3 out of 5 in the Metavinculin Abd-F-Actin Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Metavinculin Abd-F-Actin Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg402 b:38.2 occ:1.00 O3B A:ADP401 2.2 48.4 1.0 OE1 A:GLN137 3.4 42.4 1.0 PB A:ADP401 3.5 48.4 1.0 O1B A:ADP401 3.9 48.4 1.0 O2A A:ADP401 4.0 48.4 1.0 CD A:GLN137 4.1 42.4 1.0 OD2 A:ASP11 4.3 46.3 1.0 NE2 A:GLN137 4.3 42.4 1.0 O2B A:ADP401 4.3 48.4 1.0 OD1 A:ASP11 4.4 46.3 1.0 CA A:GLY13 4.5 41.2 1.0 OD1 A:ASP154 4.5 39.1 1.0 O3A A:ADP401 4.5 48.4 1.0 NZ A:LYS18 4.5 40.5 1.0 CG2 A:VAL339 4.8 40.9 1.0 CG A:ASP11 4.8 46.3 1.0 PA A:ADP401 4.8 48.4 1.0 CA A:GLY156 5.0 36.9 1.0

Magnesium binding site 4 out of 5 in the Metavinculin Abd-F-Actin Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Metavinculin Abd-F-Actin Complex within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg402 b:34.2 occ:1.00 O2B D:ADP401 2.1 48.4 1.0 PB D:ADP401 3.4 48.4 1.0 O3B D:ADP401 3.7 48.4 1.0 OE1 D:GLN137 3.8 38.5 1.0 O2A D:ADP401 4.1 48.4 1.0 CD D:GLN137 4.1 38.5 1.0 OD2 D:ASP11 4.2 44.1 1.0 NE2 D:GLN137 4.2 38.5 1.0 O1B D:ADP401 4.3 48.4 1.0 OD1 D:ASP154 4.4 32.4 1.0 OD1 D:ASP11 4.4 44.1 1.0 CA D:GLY13 4.5 42.8 1.0 O3A D:ADP401 4.5 48.4 1.0 NZ D:LYS18 4.6 38.7 1.0 CG D:ASP11 4.7 44.1 1.0 CG2 D:VAL339 4.8 36.1 1.0 PA D:ADP401 4.9 48.4 1.0 CA D:GLY156 5.0 34.0 1.0

Magnesium binding site 5 out of 5 in the Metavinculin Abd-F-Actin Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Metavinculin Abd-F-Actin Complex within 5.0Å range: probe atom residue distance (Å) B Occ E:Mg402 b:38.2 occ:1.00 O3B E:ADP401 2.0 44.9 1.0 PB E:ADP401 3.5 44.9 1.0 OE1 E:GLN137 3.6 46.4 1.0 O2A E:ADP401 3.9 44.9 1.0 O1B E:ADP401 4.1 44.9 1.0 O2B E:ADP401 4.2 44.9 1.0 OD1 E:ASP154 4.2 39.7 1.0 CD E:GLN137 4.2 46.4 1.0 OD2 E:ASP11 4.3 52.9 1.0 NE2 E:GLN137 4.4 46.4 1.0 O3A E:ADP401 4.4 44.9 1.0 CA E:GLY156 4.6 38.5 1.0 NZ E:LYS18 4.6 48.4 1.0 OD1 E:ASP11 4.7 52.9 1.0 PA E:ADP401 4.7 44.9 1.0 CA E:GLY13 4.7 48.5 1.0 CG2 E:VAL339 4.8 46.1 1.0 CG E:ASP11 4.9 52.9 1.0

L.Mei, S.Espinosa De Los Reyes, M.J.Reynolds, R.Leicher, S.Liu, G.M.Alushin. Molecular Mechanism For Direct Actin Force-Sensing By Alpha-Catenin. Elife V. 9 2020.
ISSN: ESSN 2050-084X
PubMed: 32969337
DOI: 10.7554/ELIFE.62514