Atomistry » Magnesium » PDB 6up0-6uxw » 6usr
Atomistry »
  Magnesium »
    PDB 6up0-6uxw »
      6usr »

Magnesium in PDB 6usr: Telomerase Reverse Transcriptase Ternary Complex, Tert:Dna:Dgpcpp

Enzymatic activity of Telomerase Reverse Transcriptase Ternary Complex, Tert:Dna:Dgpcpp

All present enzymatic activity of Telomerase Reverse Transcriptase Ternary Complex, Tert:Dna:Dgpcpp:
2.7.7.49;

Protein crystallography data

The structure of Telomerase Reverse Transcriptase Ternary Complex, Tert:Dna:Dgpcpp, PDB code: 6usr was solved by M.A.Schaich, B.D.Freudenthal, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 48.72 / 2.93
Space group P 32 2 1
Cell size a, b, c (Å), α, β, γ (°) 97.437, 97.437, 164.148, 90.00, 90.00, 120.00
R / Rfree (%) 26.5 / 29

Other elements in 6usr:

The structure of Telomerase Reverse Transcriptase Ternary Complex, Tert:Dna:Dgpcpp also contains other interesting chemical elements:

Potassium (K) 1 atom

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Telomerase Reverse Transcriptase Ternary Complex, Tert:Dna:Dgpcpp (pdb code 6usr). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 5 binding sites of Magnesium where determined in the Telomerase Reverse Transcriptase Ternary Complex, Tert:Dna:Dgpcpp, PDB code: 6usr:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5;

Magnesium binding site 1 out of 5 in 6usr

Go back to Magnesium Binding Sites List in 6usr
Magnesium binding site 1 out of 5 in the Telomerase Reverse Transcriptase Ternary Complex, Tert:Dna:Dgpcpp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Telomerase Reverse Transcriptase Ternary Complex, Tert:Dna:Dgpcpp within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg601

b:52.8
occ:1.00
 OP1 E:DT13 3.7 42.4 1.0
O3' E:DG12 4.0 44.5 1.0
P E:DT13 4.5 57.5 1.0
CE1 A:PHE417 4.8 57.5 1.0
CD A:LYS416 4.8 57.9 1.0
CB A:CYS473 4.9 63.4 1.0

Magnesium binding site 2 out of 5 in 6usr

Go back to Magnesium Binding Sites List in 6usr
Magnesium binding site 2 out of 5 in the Telomerase Reverse Transcriptase Ternary Complex, Tert:Dna:Dgpcpp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Telomerase Reverse Transcriptase Ternary Complex, Tert:Dna:Dgpcpp within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg602

b:83.5
occ:1.00
 OD2 A:ASP251 2.2 78.4 1.0
O1B A:G2P604 2.3 74.4 0.8
OD2 A:ASP343 2.3 78.0 1.0
O A:ILE252 2.5 77.3 1.0
O1G A:G2P604 2.7 76.8 0.8
O1A A:G2P604 3.1 77.6 0.8
PB A:G2P604 3.1 98.0 0.8
C3A A:G2P604 3.1 80.1 0.8
CG A:ASP343 3.3 77.8 1.0
O3B A:G2P604 3.3 85.1 0.8
CG A:ASP251 3.4 84.3 1.0
PA A:G2P604 3.6 75.8 0.8
PG A:G2P604 3.6 76.8 0.8
OD1 A:ASP343 3.6 78.9 1.0
MG A:MG603 3.8 82.1 1.0
C5' A:G2P604 3.8 74.7 0.8
C A:ILE252 3.8 72.1 1.0
K A:K605 4.0 96.8 1.0
OD1 A:ASP251 4.1 93.0 1.0
O5' A:G2P604 4.1 74.7 0.8
N A:ILE252 4.3 86.4 1.0
N A:ASP254 4.5 75.2 1.0
O2B A:G2P604 4.5 78.1 0.8
C A:ASP251 4.6 80.4 1.0
CB A:ASP343 4.6 64.6 1.0
CB A:ASP251 4.6 77.5 1.0
O3G A:G2P604 4.6 82.7 0.8
CA A:ILE252 4.6 72.1 1.0
O2G A:G2P604 4.6 83.4 0.8
N A:ARG253 4.7 66.0 1.0
CA A:ARG253 4.8 64.3 1.0
O A:ASP343 4.8 79.3 1.0
N A:ALA255 4.8 74.8 1.0
O3' E:DA15 4.8 72.3 1.0
CA A:ASP251 4.9 75.5 1.0
C4' A:G2P604 4.9 71.7 0.8
O2A A:G2P604 5.0 68.6 0.8
O A:ASP251 5.0 76.3 1.0

Magnesium binding site 3 out of 5 in 6usr

Go back to Magnesium Binding Sites List in 6usr
Magnesium binding site 3 out of 5 in the Telomerase Reverse Transcriptase Ternary Complex, Tert:Dna:Dgpcpp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Telomerase Reverse Transcriptase Ternary Complex, Tert:Dna:Dgpcpp within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg603

b:82.1
occ:1.00
 OD1 A:ASP251 2.2 93.0 1.0
O3' E:DA15 2.2 72.3 1.0
O1A A:G2P604 2.3 77.6 0.8
OD2 A:ASP344 2.5 75.8 1.0
O A:HOH714 2.6 77.1 1.0
CG A:ASP251 3.0 84.3 1.0
OD2 A:ASP251 3.1 78.4 1.0
OD1 A:ASP343 3.2 78.9 1.0
CG A:ASP344 3.4 73.6 1.0
K A:K605 3.4 96.8 1.0
C3' E:DA15 3.6 74.2 1.0
OD1 A:ASP344 3.7 73.3 1.0
MG A:MG602 3.8 83.5 1.0
PA A:G2P604 3.8 75.8 0.8
CG A:ASP343 4.0 77.8 1.0
OD2 A:ASP343 4.1 78.0 1.0
O5' E:DA15 4.3 68.4 1.0
O A:HOH726 4.3 83.8 1.0
CB A:ASP251 4.4 77.5 1.0
C4' E:DA15 4.5 71.7 1.0
O2A A:G2P604 4.5 68.6 0.8
C2' E:DA15 4.5 67.7 1.0
C5' A:G2P604 4.6 74.7 0.8
CB A:ASP344 4.6 78.4 1.0
O5' A:G2P604 4.7 74.7 0.8
C3A A:G2P604 4.9 80.1 0.8
C5' E:DA15 4.9 75.6 1.0

Magnesium binding site 4 out of 5 in 6usr

Go back to Magnesium Binding Sites List in 6usr
Magnesium binding site 4 out of 5 in the Telomerase Reverse Transcriptase Ternary Complex, Tert:Dna:Dgpcpp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Telomerase Reverse Transcriptase Ternary Complex, Tert:Dna:Dgpcpp within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Mg101

b:86.7
occ:1.00
 N7 E:DG11 4.3 69.8 1.0
O6 E:DG12 4.5 67.5 1.0
N7 E:DG12 4.7 60.0 1.0
C8 E:DG11 4.9 64.5 1.0

Magnesium binding site 5 out of 5 in 6usr

Go back to Magnesium Binding Sites List in 6usr
Magnesium binding site 5 out of 5 in the Telomerase Reverse Transcriptase Ternary Complex, Tert:Dna:Dgpcpp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Telomerase Reverse Transcriptase Ternary Complex, Tert:Dna:Dgpcpp within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Mg101

b:0.5
occ:1.00
 OP1 F:DC11 2.9 0.6 1.0
C5' F:DC11 3.2 0.5 1.0
P F:DC11 3.8 0.9 1.0
O5' F:DC11 3.8 0.2 1.0
O3' F:C10 3.9 94.6 1.0
C4' F:DC11 4.5 98.5 1.0

Reference:

M.A.Schaich, S.L.Sanford, G.Welfer, T.H.Khoang, S.A.Johnson, P.L.Opresko, B.D.Freudenthal. Telomerase Reverse Transcriptase Ternary Complex, Tert:Dna:Dgpcpp To Be Published.
Page generated: Tue Oct 1 21:15:45 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy