Magnesium in PDB 6ut6: Cryo-Em Structure of the Escherichia Coli Mcrbc Complex

The binding sites of Magnesium atom in the Cryo-Em Structure of the Escherichia Coli Mcrbc Complex (pdb code 6ut6). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 4 binding sites of Magnesium where determined in the Cryo-Em Structure of the Escherichia Coli Mcrbc Complex, PDB code: 6ut6:
Jump to Magnesium binding site number: 1; 2; 3; 4;

Magnesium binding site 1 out of 4 in the Cryo-Em Structure of the Escherichia Coli Mcrbc Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of the Escherichia Coli Mcrbc Complex within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg502 b:23.2 occ:1.00 OG1 B:THR208 2.1 34.9 1.0 O2G B:GSP501 2.7 43.5 1.0 O2B B:GSP501 3.0 43.5 1.0 OD1 B:ASP279 3.1 28.4 1.0 OD2 B:ASP279 3.2 28.4 1.0 NH2 C:ARG349 3.3 31.9 1.0 CB B:THR208 3.5 34.9 1.0 CG B:ASP279 3.5 28.4 1.0 CG2 B:THR208 4.0 34.9 1.0 PG B:GSP501 4.1 43.5 1.0 PB B:GSP501 4.3 43.5 1.0 OE1 C:GLU298 4.5 28.3 1.0 CZ C:ARG349 4.6 31.9 1.0 CA B:THR208 4.6 34.9 1.0 O3B B:GSP501 4.6 43.5 1.0 CB C:MET295 4.6 26.9 1.0 N B:THR208 4.7 34.9 1.0 O2A B:GSP501 4.7 43.5 1.0 CA C:MET295 4.9 26.9 1.0 OE1 B:GLU280 4.9 33.7 1.0 S1G B:GSP501 4.9 43.5 1.0 NH1 C:ARG349 5.0 31.9 1.0 CG C:MET295 5.0 26.9 1.0

Magnesium binding site 2 out of 4 in the Cryo-Em Structure of the Escherichia Coli Mcrbc Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryo-Em Structure of the Escherichia Coli Mcrbc Complex within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg502 b:16.5 occ:1.00 OG1 C:THR208 2.1 18.7 1.0 O2B C:GSP501 2.1 25.6 1.0 O3G C:GSP501 2.3 25.6 1.0 OD1 C:ASP279 3.2 14.6 1.0 OD2 C:ASP279 3.2 14.6 1.0 CB C:THR208 3.4 18.7 1.0 PB C:GSP501 3.5 25.6 1.0 CG C:ASP279 3.6 14.6 1.0 PG C:GSP501 3.7 25.6 1.0 NH2 D:ARG349 3.7 19.4 1.0 CG2 C:THR208 4.1 18.7 1.0 O3B C:GSP501 4.1 25.6 1.0 CG D:MET295 4.2 17.2 1.0 O3A C:GSP501 4.4 25.6 1.0 CB D:MET295 4.5 17.2 1.0 O1B C:GSP501 4.5 25.6 1.0 CA C:THR208 4.5 18.7 1.0 N C:THR208 4.5 18.7 1.0 O2G C:GSP501 4.6 25.6 1.0 CG C:GLU280 4.7 18.2 1.0 S1G C:GSP501 4.7 25.6 1.0 OE2 C:GLU280 4.8 18.2 1.0 CZ D:ARG349 4.9 19.4 1.0 OE1 D:GLU298 4.9 18.5 1.0

Magnesium binding site 3 out of 4 in the Cryo-Em Structure of the Escherichia Coli Mcrbc Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Cryo-Em Structure of the Escherichia Coli Mcrbc Complex within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg502 b:22.0 occ:1.00 OG1 D:THR208 2.1 21.3 1.0 O3G D:GSP501 2.4 37.0 1.0 OD1 D:ASP279 2.9 18.5 1.0 OD2 D:ASP279 3.0 18.5 1.0 O1B D:GSP501 3.1 37.0 1.0 CG D:ASP279 3.3 18.5 1.0 CB D:THR208 3.4 21.3 1.0 CG2 D:THR208 3.8 21.3 1.0 PG D:GSP501 3.9 37.0 1.0 CG E:MET295 4.1 16.2 1.0 NH2 E:ARG349 4.4 16.4 1.0 PB D:GSP501 4.4 37.0 1.0 O2G D:GSP501 4.4 37.0 1.0 OE2 D:GLU280 4.4 17.0 1.0 CA D:THR208 4.5 21.3 1.0 CG D:GLU280 4.6 17.0 1.0 N D:THR208 4.6 21.3 1.0 CB E:MET295 4.7 16.2 1.0 O3B D:GSP501 4.7 37.0 1.0 CD D:GLU280 4.7 17.0 1.0 CB D:ASP279 4.8 18.5 1.0 O2A D:GSP501 4.8 37.0 1.0 S1G D:GSP501 4.9 37.0 1.0

Magnesium binding site 4 out of 4 in the Cryo-Em Structure of the Escherichia Coli Mcrbc Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Cryo-Em Structure of the Escherichia Coli Mcrbc Complex within 5.0Å range: probe atom residue distance (Å) B Occ E:Mg502 b:16.3 occ:1.00 OG1 E:THR208 2.1 22.0 1.0 O2G E:GSP501 2.2 25.4 1.0 O1B E:GSP501 2.9 25.4 1.0 OD1 E:ASP279 3.1 16.8 1.0 OD2 E:ASP279 3.2 16.8 1.0 CB E:THR208 3.5 22.0 1.0 PG E:GSP501 3.5 25.4 1.0 CG E:ASP279 3.6 16.8 1.0 O3G E:GSP501 3.9 25.4 1.0 OE1 E:GLU280 3.9 14.2 1.0 PB E:GSP501 4.1 25.4 1.0 NH2 F:ARG349 4.1 19.1 1.0 CG2 E:THR208 4.2 22.0 1.0 O3B E:GSP501 4.3 25.4 1.0 N E:THR208 4.3 22.0 1.0 CD E:GLU280 4.4 14.2 1.0 CA E:THR208 4.4 22.0 1.0 O2B E:GSP501 4.7 25.4 1.0 S1G E:GSP501 4.8 25.4 1.0 CG E:GLU280 4.8 14.2 1.0 O2A E:GSP501 4.9 25.4 1.0 OE1 F:GLU298 5.0 20.1 1.0 CD1 E:LEU331 5.0 15.2 1.0 OE2 E:GLU280 5.0 14.2 1.0

Y.Niu, H.Suzuki, C.J.Hosford, T.Walz, J.S.Chappie. Structural Asymmetry Governs the Assembly and Gtpase Activity of Mcrbc Restriction Complexes To Be Published.