Magnesium in PDB 6uyh: Crystal Structure of Prolyl-Trna Synthetase From Naegleria Fowleri in Complex with Halofuginone and Amppnp

The structure of Crystal Structure of Prolyl-Trna Synthetase From Naegleria Fowleri in Complex with Halofuginone and Amppnp, PDB code: 6uyh was solved by Seattle Structural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	42.66 / 1.75
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	157.290, 66.540, 112.560, 90.00, 101.74, 90.00
R / Rfree (%)	15.4 / 18

The structure of Crystal Structure of Prolyl-Trna Synthetase From Naegleria Fowleri in Complex with Halofuginone and Amppnp also contains other interesting chemical elements:

Bromine	(Br)	2 atoms
Chlorine	(Cl)	2 atoms

The binding sites of Magnesium atom in the Crystal Structure of Prolyl-Trna Synthetase From Naegleria Fowleri in Complex with Halofuginone and Amppnp (pdb code 6uyh). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of Prolyl-Trna Synthetase From Naegleria Fowleri in Complex with Halofuginone and Amppnp, PDB code: 6uyh:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Crystal Structure of Prolyl-Trna Synthetase From Naegleria Fowleri in Complex with Halofuginone and Amppnp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Prolyl-Trna Synthetase From Naegleria Fowleri in Complex with Halofuginone and Amppnp within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg603 b:31.6 occ:1.00 O2B A:ANP601 2.0 32.0 1.0 O A:HOH834 2.0 27.6 1.0 O A:HOH733 2.1 22.4 1.0 O A:HOH800 2.1 33.5 1.0 O2G A:ANP601 2.3 37.1 1.0 O A:HOH1019 2.3 35.9 1.0 PB A:ANP601 3.4 37.3 1.0 PG A:ANP601 3.6 45.0 1.0 NH1 A:ARG142 3.7 22.6 1.0 N3B A:ANP601 3.8 46.8 1.0 O A:HOH726 4.1 22.6 0.4 OE2 A:GLU144 4.1 29.0 1.0 O1B A:ANP601 4.2 38.7 1.0 O1G A:ANP601 4.3 48.4 1.0 OE1 A:GLU144 4.3 28.5 1.0 N1 A:HFG602 4.3 24.0 1.0 O A:HOH726 4.4 28.1 0.6 NH1 A:ARG153 4.4 30.8 1.0 O3A A:ANP601 4.4 31.4 1.0 N7 A:ANP601 4.5 23.1 1.0 OE2 A:GLU90 4.5 37.3 1.0 CD A:GLU144 4.7 29.6 1.0 C2 A:HFG602 4.7 22.2 1.0 OE1 A:GLU90 4.7 47.2 1.0 O3G A:ANP601 4.8 52.9 1.0 CD A:ARG142 4.8 22.0 1.0 CZ A:ARG142 4.8 24.8 1.0 C8 A:ANP601 5.0 21.8 1.0

Magnesium binding site 2 out of 2 in the Crystal Structure of Prolyl-Trna Synthetase From Naegleria Fowleri in Complex with Halofuginone and Amppnp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of Prolyl-Trna Synthetase From Naegleria Fowleri in Complex with Halofuginone and Amppnp within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg705 b:25.8 occ:1.00 O2B B:ANP703 2.0 26.3 1.0 O B:HOH967 2.1 24.8 1.0 O2G B:ANP703 2.1 31.9 1.0 O B:HOH830 2.1 20.0 1.0 O B:HOH1055 2.2 33.4 1.0 O B:HOH895 2.2 27.1 1.0 PB B:ANP703 3.4 34.8 1.0 PG B:ANP703 3.4 40.9 1.0 N3B B:ANP703 3.7 45.8 1.0 NH1 B:ARG142 3.8 19.9 1.0 O1B B:ANP703 4.2 36.3 1.0 OE2 B:GLU144 4.2 27.1 1.0 O B:HOH907 4.2 44.3 1.0 O1G B:ANP703 4.2 47.1 1.0 NH1 B:ARG153 4.3 29.2 1.0 OE1 B:GLU144 4.4 24.1 1.0 O3A B:ANP703 4.4 31.8 1.0 OE1 B:GLU90 4.4 35.2 1.0 N1 B:HFG704 4.4 20.6 1.0 N7 B:ANP703 4.4 20.9 1.0 OE2 B:GLU90 4.4 44.2 1.0 O B:HOH812 4.6 61.3 1.0 O3G B:ANP703 4.6 48.5 1.0 CD B:GLU144 4.7 27.3 1.0 C2 B:HFG704 4.8 19.0 1.0 CD B:ARG142 4.8 17.9 1.0 CD B:GLU90 4.9 44.3 1.0 CZ B:ARG142 4.9 19.3 1.0 C8 B:ANP703 4.9 19.6 1.0

D.M.Dranow, J.Abendroth, D.D.Lorimer, P.S.Horanyi, T.E.Edwards. Crystal Structure of Prolyl-Trna Synthetase From Naegleria Fowleri in Complex with Halofuginone and Amppnp To Be Published.