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Magnesium in PDB 6uzv: The Structure of A Red Shifted Photosystem I Complex

Enzymatic activity of The Structure of A Red Shifted Photosystem I Complex

All present enzymatic activity of The Structure of A Red Shifted Photosystem I Complex:
1.97.1.12;

Other elements in 6uzv:

The structure of The Structure of A Red Shifted Photosystem I Complex also contains other interesting chemical elements:

Iron (Fe) 36 atoms
Calcium (Ca) 3 atoms

Magnesium Binding Sites:

Magnesium binding site 1 out of 291 in 6uzv

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Magnesium binding site 1 out of 291 in the The Structure of A Red Shifted Photosystem I Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of The Structure of A Red Shifted Photosystem I Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg803

b:15.9
occ:1.00
MG A:CL0803 0.0 15.9 1.0
NB A:CL0803 2.0 15.9 1.0
ND A:CL0803 2.0 15.9 1.0
NC A:CL0803 2.1 15.9 1.0
NA A:CL0803 2.1 15.9 1.0
C4D A:CL0803 2.9 15.9 1.0
C1B A:CL0803 3.0 15.9 1.0
C4A A:CL0803 3.0 15.9 1.0
C4B A:CL0803 3.0 15.9 1.0
CE1 A:HIS676 3.0 13.8 1.0
C1C A:CL0803 3.1 15.9 1.0
C4C A:CL0803 3.1 15.9 1.0
C1D A:CL0803 3.1 15.9 1.0
C1A A:CL0803 3.1 15.9 1.0
CHB A:CL0803 3.4 15.9 1.0
CHC A:CL0803 3.4 15.9 1.0
CHA A:CL0803 3.5 15.9 1.0
CHD A:CL0803 3.5 15.9 1.0
CAB B:CLA805 3.6 12.5 1.0
C3B B:CLA805 3.8 12.5 1.0
C4B B:CLA805 3.8 12.5 1.0
ND1 A:HIS676 3.8 13.8 1.0
CHC B:CLA805 4.0 12.5 1.0
NE2 A:HIS676 4.0 13.8 1.0
C3D A:CL0803 4.2 15.9 1.0
C2B A:CL0803 4.3 15.9 1.0
C3B A:CL0803 4.3 15.9 1.0
C2C A:CL0803 4.3 15.9 1.0
C2D A:CL0803 4.3 15.9 1.0
C3C A:CL0803 4.3 15.9 1.0
C3A A:CL0803 4.4 15.9 1.0
C2B B:CLA805 4.4 12.5 1.0
C2A A:CL0803 4.4 15.9 1.0
CBB B:CLA805 4.5 12.5 1.0
NB B:CLA805 4.6 12.5 1.0
C1B B:CLA805 4.8 12.5 1.0
C1C B:CLA805 4.9 12.5 1.0
CBD A:CL0803 4.9 15.9 1.0
CMB B:CLA805 4.9 12.5 1.0
CMA A:CL0803 5.0 15.9 1.0

Magnesium binding site 2 out of 291 in 6uzv

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Magnesium binding site 2 out of 291 in the The Structure of A Red Shifted Photosystem I Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of The Structure of A Red Shifted Photosystem I Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg804

b:17.3
occ:1.00
MG A:CLA804 0.0 17.3 1.0
NB A:CLA804 2.0 17.3 1.0
ND A:CLA804 2.0 17.3 1.0
NC A:CLA804 2.1 17.3 1.0
NA A:CLA804 2.1 17.3 1.0
C4D A:CLA804 2.9 17.3 1.0
C1B A:CLA804 3.0 17.3 1.0
C4B A:CLA804 3.0 17.3 1.0
C4A A:CLA804 3.0 17.3 1.0
C1C A:CLA804 3.1 17.3 1.0
C1D A:CLA804 3.1 17.3 1.0
C4C A:CLA804 3.1 17.3 1.0
C1A A:CLA804 3.1 17.3 1.0
CHB A:CLA804 3.4 17.3 1.0
CHC A:CLA804 3.4 17.3 1.0
CHA A:CLA804 3.4 17.3 1.0
CHD A:CLA804 3.5 17.3 1.0
CBB B:CLA806 3.8 11.1 1.0
CAB B:CLA806 4.2 11.1 1.0
C3D A:CLA804 4.2 17.3 1.0
C2B A:CLA804 4.2 17.3 1.0
C3B A:CLA804 4.2 17.3 1.0
OD1 A:ASN600 4.3 11.8 1.0
C2D A:CLA804 4.3 17.3 1.0
C2C A:CLA804 4.3 17.3 1.0
CB B:ALA659 4.3 10.3 1.0
C3C A:CLA804 4.3 17.3 1.0
C3A A:CLA804 4.4 17.3 1.0
C2A A:CLA804 4.4 17.3 1.0
C20 A:CL0803 4.5 15.9 1.0
C2 A:CL0803 4.8 15.9 1.0
C3 A:CL0803 4.8 15.9 1.0
CBD A:CLA804 4.9 17.3 1.0
CMA A:CLA804 4.9 17.3 1.0

Magnesium binding site 3 out of 291 in 6uzv

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Magnesium binding site 3 out of 291 in the The Structure of A Red Shifted Photosystem I Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of The Structure of A Red Shifted Photosystem I Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg805

b:36.0
occ:1.00
MG A:CLA805 0.0 36.0 1.0
NB A:CLA805 2.0 36.0 1.0
ND A:CLA805 2.0 36.0 1.0
NC A:CLA805 2.1 36.0 1.0
NA A:CLA805 2.1 36.0 1.0
C4D A:CLA805 2.9 36.0 1.0
NE2 A:HIS52 2.9 27.5 1.0
C1B A:CLA805 3.0 36.0 1.0
C4B A:CLA805 3.0 36.0 1.0
C4A A:CLA805 3.0 36.0 1.0
C1C A:CLA805 3.1 36.0 1.0
C4C A:CLA805 3.1 36.0 1.0
C1D A:CLA805 3.1 36.0 1.0
C1A A:CLA805 3.1 36.0 1.0
CHB A:CLA805 3.4 36.0 1.0
CHC A:CLA805 3.4 36.0 1.0
CHA A:CLA805 3.5 36.0 1.0
CB J:PRO12 3.5 45.0 1.0
CHD A:CLA805 3.5 36.0 1.0
CG J:PRO12 3.6 45.0 1.0
CE1 A:HIS52 3.7 27.5 1.0
CD2 A:HIS52 4.0 27.5 1.0
C3D A:CLA805 4.2 36.0 1.0
C2B A:CLA805 4.3 36.0 1.0
C3B A:CLA805 4.3 36.0 1.0
C2C A:CLA805 4.3 36.0 1.0
C2D A:CLA805 4.3 36.0 1.0
CD J:PRO12 4.3 45.0 1.0
C3C A:CLA805 4.3 36.0 1.0
C3A A:CLA805 4.4 36.0 1.0
C2A A:CLA805 4.4 36.0 1.0
CA J:PRO12 4.8 45.0 1.0
CBD A:CLA805 4.9 36.0 1.0
ND1 A:HIS52 4.9 27.5 1.0
C39 J:BCR104 4.9 49.3 1.0
CMA A:CLA805 4.9 36.0 1.0

Magnesium binding site 4 out of 291 in 6uzv

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Magnesium binding site 4 out of 291 in the The Structure of A Red Shifted Photosystem I Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of The Structure of A Red Shifted Photosystem I Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg806

b:30.1
occ:1.00
MG A:CLA806 0.0 30.1 1.0
NB A:CLA806 2.0 30.1 1.0
ND A:CLA806 2.0 30.1 1.0
NC A:CLA806 2.1 30.1 1.0
NA A:CLA806 2.1 30.1 1.0
C4D A:CLA806 2.9 30.1 1.0
C1B A:CLA806 3.0 30.1 1.0
C4A A:CLA806 3.0 30.1 1.0
C4B A:CLA806 3.1 30.1 1.0
C1C A:CLA806 3.1 30.1 1.0
CE1 A:HIS56 3.1 27.2 1.0
C4C A:CLA806 3.1 30.1 1.0
C1D A:CLA806 3.1 30.1 1.0
C1A A:CLA806 3.1 30.1 1.0
CHB A:CLA806 3.4 30.1 1.0
CHC A:CLA806 3.4 30.1 1.0
CHA A:CLA806 3.5 30.1 1.0
NE2 A:HIS56 3.5 27.2 1.0
C8 A:CLA813 3.5 34.0 1.0
CHD A:CLA806 3.5 30.1 1.0
C9 A:CLA813 4.0 34.0 1.0
C11 A:CLA813 4.2 34.0 1.0
C3D A:CLA806 4.2 30.1 1.0
C7 A:CLA813 4.2 34.0 1.0
C5 A:CLA813 4.3 34.0 1.0
C2B A:CLA806 4.3 30.1 1.0
ND1 A:HIS56 4.3 27.2 1.0
C3B A:CLA806 4.3 30.1 1.0
C2D A:CLA806 4.3 30.1 1.0
C2C A:CLA806 4.3 30.1 1.0
C3C A:CLA806 4.4 30.1 1.0
C3A A:CLA806 4.4 30.1 1.0
C2A A:CLA806 4.4 30.1 1.0
C10 A:CLA813 4.5 34.0 1.0
C6 A:CLA813 4.9 34.0 1.0
CD2 A:HIS56 4.9 27.2 1.0
CBD A:CLA806 4.9 30.1 1.0
CMA A:CLA806 5.0 30.1 1.0

Magnesium binding site 5 out of 291 in 6uzv

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Magnesium binding site 5 out of 291 in the The Structure of A Red Shifted Photosystem I Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of The Structure of A Red Shifted Photosystem I Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg807

b:22.3
occ:1.00
MG A:CLA807 0.0 22.3 1.0
NB A:CLA807 2.0 22.3 1.0
ND A:CLA807 2.0 22.3 1.0
NC A:CLA807 2.1 22.3 1.0
NA A:CLA807 2.1 22.3 1.0
C4D A:CLA807 2.9 22.3 1.0
NE2 A:HIS76 2.9 20.3 1.0
C1B A:CLA807 3.0 22.3 1.0
C4A A:CLA807 3.0 22.3 1.0
C4B A:CLA807 3.0 22.3 1.0
C1C A:CLA807 3.0 22.3 1.0
C4C A:CLA807 3.1 22.3 1.0
C1A A:CLA807 3.1 22.3 1.0
C1D A:CLA807 3.1 22.3 1.0
CMB A:CLA832 3.3 22.2 1.0
CD2 A:HIS76 3.4 20.3 1.0
CHB A:CLA807 3.4 22.3 1.0
CHC A:CLA807 3.4 22.3 1.0
CHA A:CLA807 3.4 22.3 1.0
CHD A:CLA807 3.5 22.3 1.0
CE1 A:HIS76 4.1 20.3 1.0
C3D A:CLA807 4.2 22.3 1.0
C2B A:CLA807 4.3 22.3 1.0
C3B A:CLA807 4.3 22.3 1.0
C2C A:CLA807 4.3 22.3 1.0
C3C A:CLA807 4.3 22.3 1.0
C2D A:CLA807 4.3 22.3 1.0
C3A A:CLA807 4.3 22.3 1.0
C2B A:CLA832 4.4 22.2 1.0
C2A A:CLA807 4.4 22.3 1.0
CG A:HIS76 4.6 20.3 1.0
CBD A:CLA807 4.9 22.3 1.0
CBB A:CLA832 4.9 22.2 1.0
ND1 A:HIS76 4.9 20.3 1.0
CMA A:CLA807 4.9 22.3 1.0
CG2 A:ILE72 5.0 26.1 1.0

Magnesium binding site 6 out of 291 in 6uzv

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Magnesium binding site 6 out of 291 in the The Structure of A Red Shifted Photosystem I Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of The Structure of A Red Shifted Photosystem I Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg808

b:20.6
occ:1.00
MG A:CLA808 0.0 20.6 1.0
NB A:CLA808 2.0 20.6 1.0
ND A:CLA808 2.0 20.6 1.0
NC A:CLA808 2.1 20.6 1.0
NA A:CLA808 2.1 20.6 1.0
C4D A:CLA808 2.9 20.6 1.0
NE2 A:HIS79 3.0 20.0 1.0
C1B A:CLA808 3.0 20.6 1.0
C4A A:CLA808 3.0 20.6 1.0
C4B A:CLA808 3.1 20.6 1.0
C1C A:CLA808 3.1 20.6 1.0
C4C A:CLA808 3.1 20.6 1.0
C1D A:CLA808 3.1 20.6 1.0
C1A A:CLA808 3.1 20.6 1.0
CHB A:CLA808 3.3 20.6 1.0
CHC A:CLA808 3.4 20.6 1.0
CHA A:CLA808 3.4 20.6 1.0
CHD A:CLA808 3.5 20.6 1.0
C16 A:CLA808 3.5 20.6 1.0
CE1 A:HIS79 3.7 20.0 1.0
CD2 A:HIS79 3.9 20.0 1.0
C18 A:CLA808 4.0 20.6 1.0
C17 A:CLA808 4.0 20.6 1.0
C3D A:CLA808 4.2 20.6 1.0
C2B A:CLA808 4.3 20.6 1.0
C3B A:CLA808 4.3 20.6 1.0
C2C A:CLA808 4.3 20.6 1.0
C3C A:CLA808 4.3 20.6 1.0
C2D A:CLA808 4.3 20.6 1.0
C3A A:CLA808 4.3 20.6 1.0
C2A A:CLA808 4.4 20.6 1.0
C19 A:CLA808 4.7 20.6 1.0
ND1 A:HIS79 4.9 20.0 1.0
CBD A:CLA808 4.9 20.6 1.0
C15 A:CLA808 4.9 20.6 1.0
CMA A:CLA808 4.9 20.6 1.0
CG A:HIS79 5.0 20.0 1.0

Magnesium binding site 7 out of 291 in 6uzv

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Magnesium binding site 7 out of 291 in the The Structure of A Red Shifted Photosystem I Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of The Structure of A Red Shifted Photosystem I Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg809

b:40.6
occ:1.00
MG A:CLA809 0.0 40.6 1.0
NB A:CLA809 2.0 40.6 1.0
ND A:CLA809 2.0 40.6 1.0
NC A:CLA809 2.1 40.6 1.0
NA A:CLA809 2.1 40.6 1.0
C4D A:CLA809 2.9 40.6 1.0
C1B A:CLA809 3.0 40.6 1.0
C4A A:CLA809 3.0 40.6 1.0
C4B A:CLA809 3.0 40.6 1.0
C1C A:CLA809 3.1 40.6 1.0
C4C A:CLA809 3.1 40.6 1.0
C1A A:CLA809 3.1 40.6 1.0
CE1 A:HIS93 3.1 37.4 1.0
C1D A:CLA809 3.1 40.6 1.0
CHB A:CLA809 3.4 40.6 1.0
CHC A:CLA809 3.4 40.6 1.0
CHA A:CLA809 3.4 40.6 1.0
CHD A:CLA809 3.5 40.6 1.0
NE2 A:HIS93 3.7 37.4 1.0
C9 F:LMT202 3.8 52.0 1.0
C8 F:LMT202 3.9 52.0 1.0
C7 F:LMT202 4.0 52.0 1.0
C3D A:CLA809 4.2 40.6 1.0
C10 F:LMT202 4.3 52.0 1.0
C2B A:CLA809 4.3 40.6 1.0
ND1 A:HIS93 4.3 37.4 1.0
C3B A:CLA809 4.3 40.6 1.0
C2D A:CLA809 4.3 40.6 1.0
C2C A:CLA809 4.3 40.6 1.0
C3C A:CLA809 4.3 40.6 1.0
C3A A:CLA809 4.4 40.6 1.0
C2A A:CLA809 4.4 40.6 1.0
CBA A:CLA809 4.8 40.6 1.0
C6 F:LMT202 4.9 52.0 1.0
CBD A:CLA809 4.9 40.6 1.0

Magnesium binding site 8 out of 291 in 6uzv

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Magnesium binding site 8 out of 291 in the The Structure of A Red Shifted Photosystem I Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of The Structure of A Red Shifted Photosystem I Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg810

b:30.5
occ:1.00
MG A:CLA810 0.0 30.5 1.0
NB A:CLA810 2.0 30.5 1.0
ND A:CLA810 2.0 30.5 1.0
NC A:CLA810 2.1 30.5 1.0
NA A:CLA810 2.1 30.5 1.0
C4D A:CLA810 2.9 30.5 1.0
OE1 A:GLN115 3.0 36.7 1.0
C1B A:CLA810 3.0 30.5 1.0
C4A A:CLA810 3.0 30.5 1.0
C4B A:CLA810 3.0 30.5 1.0
C1C A:CLA810 3.1 30.5 1.0
C1A A:CLA810 3.1 30.5 1.0
C4C A:CLA810 3.1 30.5 1.0
C1D A:CLA810 3.1 30.5 1.0
CHB A:CLA810 3.4 30.5 1.0
CHC A:CLA810 3.4 30.5 1.0
CHA A:CLA810 3.5 30.5 1.0
CHD A:CLA810 3.5 30.5 1.0
CD A:GLN115 3.6 36.7 1.0
NE2 A:GLN115 3.7 36.7 1.0
C2 A:CLA830 4.0 22.6 1.0
C1 A:CLA830 4.1 22.6 1.0
O2A A:CLA830 4.2 22.6 1.0
C3D A:CLA810 4.2 30.5 1.0
C2B A:CLA810 4.3 30.5 1.0
C3B A:CLA810 4.3 30.5 1.0
C2C A:CLA810 4.3 30.5 1.0
C3 A:CLA830 4.3 22.6 1.0
C2D A:CLA810 4.3 30.5 1.0
C3C A:CLA810 4.3 30.5 1.0
C3A A:CLA810 4.4 30.5 1.0
C2A A:CLA810 4.4 30.5 1.0
C4 A:CLA830 4.7 22.6 1.0
CBD A:CLA810 4.9 30.5 1.0
C5 A:CLA830 4.9 22.6 1.0
CG A:GLN115 5.0 36.7 1.0

Magnesium binding site 9 out of 291 in 6uzv

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Magnesium binding site 9 out of 291 in the The Structure of A Red Shifted Photosystem I Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 9 of The Structure of A Red Shifted Photosystem I Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg811

b:36.7
occ:1.00
MG A:CLA811 0.0 36.7 1.0
NB A:CLA811 2.0 36.7 1.0
ND A:CLA811 2.0 36.7 1.0
NC A:CLA811 2.1 36.7 1.0
NA A:CLA811 2.1 36.7 1.0
OE1 A:GLN123 2.9 36.2 1.0
C4D A:CLA811 2.9 36.7 1.0
C1B A:CLA811 3.0 36.7 1.0
C4A A:CLA811 3.0 36.7 1.0
C4B A:CLA811 3.0 36.7 1.0
C1C A:CLA811 3.1 36.7 1.0
C1D A:CLA811 3.1 36.7 1.0
C4C A:CLA811 3.1 36.7 1.0
C1A A:CLA811 3.2 36.7 1.0
CHB A:CLA811 3.4 36.7 1.0
CHC A:CLA811 3.4 36.7 1.0
CHA A:CLA811 3.5 36.7 1.0
CHD A:CLA811 3.5 36.7 1.0
CD A:GLN123 3.8 36.2 1.0
NE2 A:GLN123 4.0 36.2 1.0
C16 A:CLA830 4.0 22.6 1.0
C13 A:CLA830 4.1 22.6 1.0
C3D A:CLA811 4.2 36.7 1.0
C2B A:CLA811 4.3 36.7 1.0
C15 A:CLA830 4.3 22.6 1.0
C12 A:CLA830 4.3 22.6 1.0
C3B A:CLA811 4.3 36.7 1.0
C2D A:CLA811 4.3 36.7 1.0
C2C A:CLA811 4.3 36.7 1.0
C3C A:CLA811 4.3 36.7 1.0
C3A A:CLA811 4.4 36.7 1.0
C2A A:CLA811 4.4 36.7 1.0
CBD A:CLA811 4.9 36.7 1.0

Magnesium binding site 10 out of 291 in 6uzv

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Magnesium binding site 10 out of 291 in the The Structure of A Red Shifted Photosystem I Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 10 of The Structure of A Red Shifted Photosystem I Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg812

b:32.4
occ:1.00
MG A:CLA812 0.0 32.4 1.0
NB A:CLA812 2.0 32.4 1.0
ND A:CLA812 2.0 32.4 1.0
NC A:CLA812 2.1 32.4 1.0
NA A:CLA812 2.1 32.4 1.0
C4D A:CLA812 2.9 32.4 1.0
NE2 A:HIS179 3.0 33.3 1.0
C1B A:CLA812 3.0 32.4 1.0
C4A A:CLA812 3.0 32.4 1.0
C4B A:CLA812 3.0 32.4 1.0
C1C A:CLA812 3.1 32.4 1.0
C1A A:CLA812 3.1 32.4 1.0
C4C A:CLA812 3.1 32.4 1.0
C1D A:CLA812 3.1 32.4 1.0
CHB A:CLA812 3.4 32.4 1.0
CHC A:CLA812 3.4 32.4 1.0
CE1 A:HIS179 3.4 33.3 1.0
CHA A:CLA812 3.4 32.4 1.0
CHD A:CLA812 3.5 32.4 1.0
CD2 A:HIS179 4.2 33.3 1.0
C3D A:CLA812 4.2 32.4 1.0
C2B A:CLA812 4.3 32.4 1.0
C3B A:CLA812 4.3 32.4 1.0
C2C A:CLA812 4.3 32.4 1.0
C2D A:CLA812 4.3 32.4 1.0
C3C A:CLA812 4.3 32.4 1.0
C3A A:CLA812 4.4 32.4 1.0
C2A A:CLA812 4.4 32.4 1.0
ND1 A:HIS179 4.7 33.3 1.0
CBD A:CLA812 4.9 32.4 1.0

Reference:

H.Toporik, A.Khmelnitskiy, Z.Dobson, R.Riddle, D.Williams, S.Lin, R.Jankowiak, Y.Mazor. The Structure of A Red-Shifted Photosystem I Reveals A Red Site in the Core Antenna. Nat Commun V. 11 5279 2020.
ISSN: ESSN 2041-1723
PubMed: 33077842
DOI: 10.1038/S41467-020-18884-W
Page generated: Tue Oct 1 21:22:07 2024

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