Atomistry » Magnesium » PDB 6uy0-6vck » 6v59
Atomistry »
  Magnesium »
    PDB 6uy0-6vck »
      6v59 »

Magnesium in PDB 6v59: Crystal Structure of the Diheme Peroxidase Btha Y463M Variant From Burkholderia Thailandensis E264

Protein crystallography data

The structure of Crystal Structure of the Diheme Peroxidase Btha Y463M Variant From Burkholderia Thailandensis E264, PDB code: 6v59 was solved by S.E.Cohen, C.L.Drennan, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 48.23 / 1.59
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 49.970, 87.605, 184.170, 90.00, 90.00, 90.00
R / Rfree (%) 15.1 / 17.7

Other elements in 6v59:

The structure of Crystal Structure of the Diheme Peroxidase Btha Y463M Variant From Burkholderia Thailandensis E264 also contains other interesting chemical elements:

Iron (Fe) 4 atoms
Chlorine (Cl) 4 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of the Diheme Peroxidase Btha Y463M Variant From Burkholderia Thailandensis E264 (pdb code 6v59). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of the Diheme Peroxidase Btha Y463M Variant From Burkholderia Thailandensis E264, PDB code: 6v59:

Magnesium binding site 1 out of 1 in 6v59

Go back to Magnesium Binding Sites List in 6v59
Magnesium binding site 1 out of 1 in the Crystal Structure of the Diheme Peroxidase Btha Y463M Variant From Burkholderia Thailandensis E264


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of the Diheme Peroxidase Btha Y463M Variant From Burkholderia Thailandensis E264 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg609

b:31.6
occ:1.00
O A:HOH895 2.1 23.3 1.0
O A:HOH1074 2.1 30.6 1.0
O A:HOH1045 2.2 30.5 1.0
O A:HOH1066 2.2 30.9 1.0
O A:HOH934 2.2 23.6 1.0
O A:HOH1141 2.3 34.8 1.0
O A:HOH915 3.8 26.5 1.0
O A:HOH963 4.0 23.2 1.0
O A:HOH1062 4.0 40.6 1.0
O A:GLY489 4.0 19.0 1.0
HA A:ASN490 4.1 17.5 1.0
O A:HOH1144 4.1 36.5 1.0
O A:HOH928 4.3 26.2 1.0
OH A:TYR432 4.3 18.1 1.0
O A:ASN490 4.4 16.5 1.0
HH A:TYR432 4.5 21.8 1.0
O A:HOH873 4.5 21.9 1.0
O A:HOH1071 4.7 29.4 1.0
C A:ASN490 4.8 16.6 1.0
O A:HOH841 4.8 22.6 1.0
CA A:ASN490 4.8 14.6 1.0
HD22 A:ASN494 4.9 53.4 1.0
HA A:ASN492 5.0 20.1 1.0

Reference:

K.Rizzolo, A.C.Weitz, S.E.Cohen, C.L.Drennan, M.P.Hendrich, S.J.Elliott. A Stable Ferryl Porphyrin at the Active Site of Y463M Btha. J.Am.Chem.Soc. V. 142 11978 2020.
ISSN: ESSN 1520-5126
PubMed: 32564595
DOI: 10.1021/JACS.0C04023
Page generated: Tue Oct 1 21:23:52 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy