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Magnesium in PDB 6vao: Human Cofilin-1 Decorated Actin Filament

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Human Cofilin-1 Decorated Actin Filament (pdb code 6vao). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 5 binding sites of Magnesium where determined in the Human Cofilin-1 Decorated Actin Filament, PDB code: 6vao:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5;

Magnesium binding site 1 out of 5 in 6vao

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Magnesium binding site 1 out of 5 in the Human Cofilin-1 Decorated Actin Filament


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Human Cofilin-1 Decorated Actin Filament within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg401

b:66.9
occ:1.00
O3B D:ADP402 2.1 71.5 1.0
O2B D:ADP402 2.8 71.5 1.0
PB D:ADP402 2.9 71.5 1.0
OD2 D:ASP154 3.4 66.0 1.0
OD1 D:ASP154 3.7 66.0 1.0
OE1 D:GLN137 3.7 69.2 1.0
CG D:ASP154 3.9 66.0 1.0
CG1 D:VAL339 4.0 69.3 1.0
O1B D:ADP402 4.0 71.5 1.0
O3A D:ADP402 4.0 71.5 1.0
CD D:GLN137 4.3 69.2 1.0
OD2 D:ASP11 4.5 75.2 1.0
CB D:VAL339 4.6 69.3 1.0
NE2 D:GLN137 4.7 69.2 1.0
CG2 D:VAL339 4.8 69.3 1.0
CA D:GLY301 5.0 65.5 1.0

Magnesium binding site 2 out of 5 in 6vao

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Magnesium binding site 2 out of 5 in the Human Cofilin-1 Decorated Actin Filament


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Human Cofilin-1 Decorated Actin Filament within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg401

b:66.9
occ:1.00
O3B A:ADP402 2.1 71.5 1.0
O2B A:ADP402 2.8 71.5 1.0
PB A:ADP402 2.9 71.5 1.0
OD2 A:ASP154 3.4 66.0 1.0
OD1 A:ASP154 3.7 66.0 1.0
OE1 A:GLN137 3.7 69.2 1.0
CG A:ASP154 3.9 66.0 1.0
CG1 A:VAL339 4.0 69.3 1.0
O1B A:ADP402 4.0 71.5 1.0
O3A A:ADP402 4.0 71.5 1.0
CD A:GLN137 4.3 69.2 1.0
OD2 A:ASP11 4.5 75.2 1.0
CB A:VAL339 4.6 69.3 1.0
NE2 A:GLN137 4.7 69.2 1.0
CG2 A:VAL339 4.8 69.3 1.0
CA A:GLY301 5.0 65.5 1.0

Magnesium binding site 3 out of 5 in 6vao

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Magnesium binding site 3 out of 5 in the Human Cofilin-1 Decorated Actin Filament


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Human Cofilin-1 Decorated Actin Filament within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg401

b:66.9
occ:1.00
O3B B:ADP402 2.1 71.5 1.0
O2B B:ADP402 2.8 71.5 1.0
PB B:ADP402 2.9 71.5 1.0
OD2 B:ASP154 3.4 66.0 1.0
OD1 B:ASP154 3.7 66.0 1.0
OE1 B:GLN137 3.7 69.2 1.0
CG B:ASP154 3.9 66.0 1.0
CG1 B:VAL339 4.0 69.3 1.0
O1B B:ADP402 4.0 71.5 1.0
O3A B:ADP402 4.0 71.5 1.0
CD B:GLN137 4.3 69.2 1.0
OD2 B:ASP11 4.5 75.2 1.0
CB B:VAL339 4.6 69.3 1.0
NE2 B:GLN137 4.7 69.2 1.0
CG2 B:VAL339 4.7 69.3 1.0
CA B:GLY301 5.0 65.5 1.0

Magnesium binding site 4 out of 5 in 6vao

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Magnesium binding site 4 out of 5 in the Human Cofilin-1 Decorated Actin Filament


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Human Cofilin-1 Decorated Actin Filament within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg401

b:66.9
occ:1.00
O3B C:ADP402 2.1 71.5 1.0
O2B C:ADP402 2.8 71.5 1.0
PB C:ADP402 2.9 71.5 1.0
OD2 C:ASP154 3.4 66.0 1.0
OD1 C:ASP154 3.7 66.0 1.0
OE1 C:GLN137 3.7 69.2 1.0
CG C:ASP154 3.9 66.0 1.0
CG1 C:VAL339 4.0 69.3 1.0
O1B C:ADP402 4.0 71.5 1.0
O3A C:ADP402 4.0 71.5 1.0
CD C:GLN137 4.3 69.2 1.0
OD2 C:ASP11 4.5 75.2 1.0
CB C:VAL339 4.6 69.3 1.0
NE2 C:GLN137 4.7 69.2 1.0
CG2 C:VAL339 4.8 69.3 1.0
CA C:GLY301 5.0 65.5 1.0

Magnesium binding site 5 out of 5 in 6vao

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Magnesium binding site 5 out of 5 in the Human Cofilin-1 Decorated Actin Filament


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Human Cofilin-1 Decorated Actin Filament within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Mg401

b:66.9
occ:1.00
O3B E:ADP402 2.1 71.5 1.0
O2B E:ADP402 2.8 71.5 1.0
PB E:ADP402 2.9 71.5 1.0
OD2 E:ASP154 3.4 66.0 1.0
OD1 E:ASP154 3.7 66.0 1.0
OE1 E:GLN137 3.7 69.2 1.0
CG E:ASP154 3.9 66.0 1.0
CG1 E:VAL339 4.0 69.3 1.0
O1B E:ADP402 4.0 71.5 1.0
O3A E:ADP402 4.0 71.5 1.0
CD E:GLN137 4.3 69.2 1.0
OD2 E:ASP11 4.5 75.2 1.0
CB E:VAL339 4.6 69.3 1.0
NE2 E:GLN137 4.7 69.2 1.0
CG2 E:VAL339 4.7 69.3 1.0
CA E:GLY301 5.0 65.5 1.0

Reference:

A.R.Huehn, J.P.Bibeau, A.C.Schramm, W.Cao, E.M.De La Cruz, C.V.Sindelar. Structures of Cofilin-Induced Structural Changes Reveal Local and Asymmetric Perturbations of Actin Filaments To Be Published.
Page generated: Tue Oct 1 21:26:53 2024

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