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Magnesium in PDB 6vec: Cryo-Em Structure of F-Actin/PLASTIN2-ABD2 Complex

Magnesium Binding Sites:

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>>> Page 1 <<< Page 2, Binding sites: 11 - 11;

Binding sites:

The binding sites of Magnesium atom in the Cryo-Em Structure of F-Actin/PLASTIN2-ABD2 Complex (pdb code 6vec). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 11 binding sites of Magnesium where determined in the Cryo-Em Structure of F-Actin/PLASTIN2-ABD2 Complex, PDB code: 6vec:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Magnesium binding site 1 out of 11 in 6vec

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Magnesium binding site 1 out of 11 in the Cryo-Em Structure of F-Actin/PLASTIN2-ABD2 Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of F-Actin/PLASTIN2-ABD2 Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg402

b:35.7
occ:1.00
O1B A:ADP401 2.0 46.8 1.0
PB A:ADP401 3.0 46.8 1.0
OE1 A:GLN139 3.0 46.4 1.0
O3B A:ADP401 3.1 46.8 1.0
OD2 A:ASP156 3.4 47.6 1.0
CD A:GLN139 3.9 46.4 1.0
O3A A:ADP401 3.9 46.8 1.0
OD1 A:ASP156 4.0 47.6 1.0
CG A:ASP156 4.1 47.6 1.0
CA A:GLY158 4.1 46.8 1.0
NE2 A:GLN139 4.2 46.4 1.0
O2B A:ADP401 4.2 46.8 1.0
O1A A:ADP401 4.3 46.8 1.0
N A:GLY158 4.7 46.8 1.0
N A:ASP159 4.8 50.4 1.0
PA A:ADP401 4.9 46.8 1.0
CA A:GLY15 5.0 47.1 1.0

Magnesium binding site 2 out of 11 in 6vec

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Magnesium binding site 2 out of 11 in the Cryo-Em Structure of F-Actin/PLASTIN2-ABD2 Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryo-Em Structure of F-Actin/PLASTIN2-ABD2 Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg402

b:74.3
occ:1.00
O1B B:ADP401 2.0 49.2 1.0
PB B:ADP401 3.0 49.2 1.0
OE1 B:GLN139 3.0 47.8 1.0
O3B B:ADP401 3.1 49.2 1.0
OD2 B:ASP156 3.4 47.5 1.0
CD B:GLN139 3.9 47.8 1.0
O3A B:ADP401 3.9 49.2 1.0
OD1 B:ASP156 4.0 47.5 1.0
CG B:ASP156 4.1 47.5 1.0
CA B:GLY158 4.1 47.6 1.0
NE2 B:GLN139 4.2 47.8 1.0
O2B B:ADP401 4.2 49.2 1.0
O1A B:ADP401 4.3 49.2 1.0
N B:GLY158 4.7 47.6 1.0
N B:ASP159 4.8 50.5 1.0
PA B:ADP401 4.9 49.2 1.0
CA B:GLY15 5.0 47.8 1.0

Magnesium binding site 3 out of 11 in 6vec

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Magnesium binding site 3 out of 11 in the Cryo-Em Structure of F-Actin/PLASTIN2-ABD2 Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Cryo-Em Structure of F-Actin/PLASTIN2-ABD2 Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg402

b:41.3
occ:1.00
O1B C:ADP401 2.0 48.1 1.0
PB C:ADP401 3.0 48.1 1.0
OE1 C:GLN139 3.0 48.5 1.0
O3B C:ADP401 3.1 48.1 1.0
OD2 C:ASP156 3.4 48.7 1.0
CD C:GLN139 3.9 48.5 1.0
O3A C:ADP401 3.9 48.1 1.0
OD1 C:ASP156 4.0 48.7 1.0
CG C:ASP156 4.1 48.7 1.0
CA C:GLY158 4.1 47.7 1.0
NE2 C:GLN139 4.2 48.5 1.0
O2B C:ADP401 4.2 48.1 1.0
O1A C:ADP401 4.3 48.1 1.0
N C:GLY158 4.7 47.7 1.0
N C:ASP159 4.8 51.3 1.0
PA C:ADP401 4.9 48.1 1.0
CA C:GLY15 5.0 49.5 1.0

Magnesium binding site 4 out of 11 in 6vec

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Magnesium binding site 4 out of 11 in the Cryo-Em Structure of F-Actin/PLASTIN2-ABD2 Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Cryo-Em Structure of F-Actin/PLASTIN2-ABD2 Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg402

b:35.2
occ:1.00
O1B D:ADP401 2.0 45.4 1.0
PB D:ADP401 3.0 45.4 1.0
OE1 D:GLN139 3.0 46.9 1.0
O3B D:ADP401 3.1 45.4 1.0
OD2 D:ASP156 3.4 44.8 1.0
CD D:GLN139 3.9 46.9 1.0
O3A D:ADP401 3.9 45.4 1.0
OD1 D:ASP156 4.0 44.8 1.0
CG D:ASP156 4.1 44.8 1.0
CA D:GLY158 4.1 43.9 1.0
NE2 D:GLN139 4.2 46.9 1.0
O2B D:ADP401 4.2 45.4 1.0
O1A D:ADP401 4.3 45.4 1.0
N D:GLY158 4.7 43.9 1.0
N D:ASP159 4.8 47.4 1.0
PA D:ADP401 4.9 45.4 1.0
CA D:GLY15 5.0 47.7 1.0

Magnesium binding site 5 out of 11 in 6vec

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Magnesium binding site 5 out of 11 in the Cryo-Em Structure of F-Actin/PLASTIN2-ABD2 Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Cryo-Em Structure of F-Actin/PLASTIN2-ABD2 Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Mg402

b:47.4
occ:1.00
O1B E:ADP401 2.0 53.1 1.0
PB E:ADP401 3.0 53.1 1.0
OE1 E:GLN139 3.0 56.2 1.0
O3B E:ADP401 3.1 53.1 1.0
OD2 E:ASP156 3.4 55.4 1.0
CD E:GLN139 3.9 56.2 1.0
O3A E:ADP401 3.9 53.1 1.0
OD1 E:ASP156 4.0 55.4 1.0
CG E:ASP156 4.1 55.4 1.0
CA E:GLY158 4.1 52.6 1.0
NE2 E:GLN139 4.2 56.2 1.0
O2B E:ADP401 4.2 53.1 1.0
O1A E:ADP401 4.3 53.1 1.0
N E:GLY158 4.7 52.6 1.0
N E:ASP159 4.8 55.2 1.0
PA E:ADP401 4.9 53.1 1.0
CA E:GLY15 5.0 53.2 1.0

Magnesium binding site 6 out of 11 in 6vec

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Magnesium binding site 6 out of 11 in the Cryo-Em Structure of F-Actin/PLASTIN2-ABD2 Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Cryo-Em Structure of F-Actin/PLASTIN2-ABD2 Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Mg402

b:41.8
occ:1.00
O1B F:ADP401 2.0 51.9 1.0
PB F:ADP401 3.0 51.9 1.0
OE1 F:GLN139 3.0 50.8 1.0
O3B F:ADP401 3.1 51.9 1.0
OD2 F:ASP156 3.4 50.2 1.0
CD F:GLN139 3.9 50.8 1.0
O3A F:ADP401 3.9 51.9 1.0
OD1 F:ASP156 4.0 50.2 1.0
CG F:ASP156 4.1 50.2 1.0
CA F:GLY158 4.1 49.9 1.0
NE2 F:GLN139 4.2 50.8 1.0
O2B F:ADP401 4.2 51.9 1.0
O1A F:ADP401 4.3 51.9 1.0
N F:GLY158 4.7 49.9 1.0
N F:ASP159 4.8 53.3 1.0
PA F:ADP401 4.9 51.9 1.0
CA F:GLY15 5.0 53.2 1.0

Magnesium binding site 7 out of 11 in 6vec

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Magnesium binding site 7 out of 11 in the Cryo-Em Structure of F-Actin/PLASTIN2-ABD2 Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Cryo-Em Structure of F-Actin/PLASTIN2-ABD2 Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Mg402

b:72.5
occ:1.00
O1B G:ADP401 2.0 67.5 1.0
PB G:ADP401 3.0 67.5 1.0
OE1 G:GLN139 3.0 73.8 1.0
O3B G:ADP401 3.1 67.5 1.0
OD2 G:ASP156 3.4 73.8 1.0
CD G:GLN139 3.9 73.8 1.0
O3A G:ADP401 3.9 67.5 1.0
OD1 G:ASP156 4.0 73.8 1.0
CG G:ASP156 4.1 73.8 1.0
CA G:GLY158 4.1 68.4 1.0
NE2 G:GLN139 4.2 73.8 1.0
O2B G:ADP401 4.2 67.5 1.0
O1A G:ADP401 4.3 67.5 1.0
N G:GLY158 4.7 68.4 1.0
N G:ASP159 4.8 69.2 1.0
PA G:ADP401 4.9 67.5 1.0
CA G:GLY15 5.0 68.5 1.0

Magnesium binding site 8 out of 11 in 6vec

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Magnesium binding site 8 out of 11 in the Cryo-Em Structure of F-Actin/PLASTIN2-ABD2 Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of Cryo-Em Structure of F-Actin/PLASTIN2-ABD2 Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
H:Mg402

b:61.0
occ:1.00
O1B H:ADP401 2.0 67.7 1.0
PB H:ADP401 3.0 67.7 1.0
OE1 H:GLN139 3.0 62.1 1.0
O3B H:ADP401 3.1 67.7 1.0
OD2 H:ASP156 3.4 61.4 1.0
CD H:GLN139 3.9 62.1 1.0
O3A H:ADP401 3.9 67.7 1.0
OD1 H:ASP156 4.0 61.4 1.0
CG H:ASP156 4.1 61.4 1.0
CA H:GLY158 4.1 64.2 1.0
NE2 H:GLN139 4.2 62.1 1.0
O2B H:ADP401 4.2 67.7 1.0
O1A H:ADP401 4.3 67.7 1.0
N H:GLY158 4.7 64.2 1.0
N H:ASP159 4.8 68.4 1.0
PA H:ADP401 4.9 67.7 1.0
CA H:GLY15 5.0 70.4 1.0

Magnesium binding site 9 out of 11 in 6vec

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Magnesium binding site 9 out of 11 in the Cryo-Em Structure of F-Actin/PLASTIN2-ABD2 Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 9 of Cryo-Em Structure of F-Actin/PLASTIN2-ABD2 Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
I:Mg402

b:94.1
occ:1.00
O1B I:ADP401 2.0 94.2 1.0
PB I:ADP401 3.0 94.2 1.0
OE1 I:GLN139 3.0 98.6 1.0
O3B I:ADP401 3.1 94.2 1.0
OD2 I:ASP156 3.4 0.5 1.0
CD I:GLN139 3.9 98.6 1.0
O3A I:ADP401 3.9 94.2 1.0
OD1 I:ASP156 4.0 0.5 1.0
CG I:ASP156 4.1 0.5 1.0
CA I:GLY158 4.1 95.5 1.0
NE2 I:GLN139 4.2 98.6 1.0
O2B I:ADP401 4.2 94.2 1.0
O1A I:ADP401 4.3 94.2 1.0
N I:GLY158 4.7 95.5 1.0
N I:ASP159 4.8 96.0 1.0
PA I:ADP401 4.9 94.2 1.0
CA I:GLY15 5.0 93.9 1.0

Magnesium binding site 10 out of 11 in 6vec

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Magnesium binding site 10 out of 11 in the Cryo-Em Structure of F-Actin/PLASTIN2-ABD2 Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 10 of Cryo-Em Structure of F-Actin/PLASTIN2-ABD2 Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
J:Mg402

b:79.4
occ:1.00
O1B J:ADP401 2.0 93.8 1.0
PB J:ADP401 3.0 93.8 1.0
OE1 J:GLN139 3.0 84.3 1.0
O3B J:ADP401 3.1 93.8 1.0
OD2 J:ASP156 3.4 83.8 1.0
CD J:GLN139 3.9 84.3 1.0
O3A J:ADP401 3.9 93.8 1.0
OD1 J:ASP156 4.0 83.8 1.0
CG J:ASP156 4.1 83.8 1.0
CA J:GLY158 4.1 88.9 1.0
NE2 J:GLN139 4.2 84.3 1.0
O2B J:ADP401 4.2 93.8 1.0
O1A J:ADP401 4.3 93.8 1.0
N J:GLY158 4.7 88.9 1.0
N J:ASP159 4.8 94.3 1.0
PA J:ADP401 4.9 93.8 1.0
CA J:GLY15 5.0 94.6 1.0

Reference:

W.Zheng, D.S.Kudryashov, E.H.Egelman. Cryo-Em Structure of F-Actin/PLASTIN2-ABD2 Complex To Be Published.
Page generated: Tue Oct 1 22:01:30 2024

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