Magnesium in PDB 6vec: Cryo-Em Structure of F-Actin/PLASTIN2-ABD2 Complex

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>>> Page 1 <<< Page 2, Binding sites: 11 - 11;

Binding sites:

The binding sites of Magnesium atom in the Cryo-Em Structure of F-Actin/PLASTIN2-ABD2 Complex (pdb code 6vec). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 11 binding sites of Magnesium where determined in the Cryo-Em Structure of F-Actin/PLASTIN2-ABD2 Complex, PDB code: 6vec:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Magnesium binding site 1 out of 11 in the Cryo-Em Structure of F-Actin/PLASTIN2-ABD2 Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of F-Actin/PLASTIN2-ABD2 Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg402 b:35.7 occ:1.00 O1B A:ADP401 2.0 46.8 1.0 PB A:ADP401 3.0 46.8 1.0 OE1 A:GLN139 3.0 46.4 1.0 O3B A:ADP401 3.1 46.8 1.0 OD2 A:ASP156 3.4 47.6 1.0 CD A:GLN139 3.9 46.4 1.0 O3A A:ADP401 3.9 46.8 1.0 OD1 A:ASP156 4.0 47.6 1.0 CG A:ASP156 4.1 47.6 1.0 CA A:GLY158 4.1 46.8 1.0 NE2 A:GLN139 4.2 46.4 1.0 O2B A:ADP401 4.2 46.8 1.0 O1A A:ADP401 4.3 46.8 1.0 N A:GLY158 4.7 46.8 1.0 N A:ASP159 4.8 50.4 1.0 PA A:ADP401 4.9 46.8 1.0 CA A:GLY15 5.0 47.1 1.0

Magnesium binding site 2 out of 11 in the Cryo-Em Structure of F-Actin/PLASTIN2-ABD2 Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryo-Em Structure of F-Actin/PLASTIN2-ABD2 Complex within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg402 b:74.3 occ:1.00 O1B B:ADP401 2.0 49.2 1.0 PB B:ADP401 3.0 49.2 1.0 OE1 B:GLN139 3.0 47.8 1.0 O3B B:ADP401 3.1 49.2 1.0 OD2 B:ASP156 3.4 47.5 1.0 CD B:GLN139 3.9 47.8 1.0 O3A B:ADP401 3.9 49.2 1.0 OD1 B:ASP156 4.0 47.5 1.0 CG B:ASP156 4.1 47.5 1.0 CA B:GLY158 4.1 47.6 1.0 NE2 B:GLN139 4.2 47.8 1.0 O2B B:ADP401 4.2 49.2 1.0 O1A B:ADP401 4.3 49.2 1.0 N B:GLY158 4.7 47.6 1.0 N B:ASP159 4.8 50.5 1.0 PA B:ADP401 4.9 49.2 1.0 CA B:GLY15 5.0 47.8 1.0

Magnesium binding site 3 out of 11 in the Cryo-Em Structure of F-Actin/PLASTIN2-ABD2 Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Cryo-Em Structure of F-Actin/PLASTIN2-ABD2 Complex within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg402 b:41.3 occ:1.00 O1B C:ADP401 2.0 48.1 1.0 PB C:ADP401 3.0 48.1 1.0 OE1 C:GLN139 3.0 48.5 1.0 O3B C:ADP401 3.1 48.1 1.0 OD2 C:ASP156 3.4 48.7 1.0 CD C:GLN139 3.9 48.5 1.0 O3A C:ADP401 3.9 48.1 1.0 OD1 C:ASP156 4.0 48.7 1.0 CG C:ASP156 4.1 48.7 1.0 CA C:GLY158 4.1 47.7 1.0 NE2 C:GLN139 4.2 48.5 1.0 O2B C:ADP401 4.2 48.1 1.0 O1A C:ADP401 4.3 48.1 1.0 N C:GLY158 4.7 47.7 1.0 N C:ASP159 4.8 51.3 1.0 PA C:ADP401 4.9 48.1 1.0 CA C:GLY15 5.0 49.5 1.0

Magnesium binding site 4 out of 11 in the Cryo-Em Structure of F-Actin/PLASTIN2-ABD2 Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Cryo-Em Structure of F-Actin/PLASTIN2-ABD2 Complex within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg402 b:35.2 occ:1.00 O1B D:ADP401 2.0 45.4 1.0 PB D:ADP401 3.0 45.4 1.0 OE1 D:GLN139 3.0 46.9 1.0 O3B D:ADP401 3.1 45.4 1.0 OD2 D:ASP156 3.4 44.8 1.0 CD D:GLN139 3.9 46.9 1.0 O3A D:ADP401 3.9 45.4 1.0 OD1 D:ASP156 4.0 44.8 1.0 CG D:ASP156 4.1 44.8 1.0 CA D:GLY158 4.1 43.9 1.0 NE2 D:GLN139 4.2 46.9 1.0 O2B D:ADP401 4.2 45.4 1.0 O1A D:ADP401 4.3 45.4 1.0 N D:GLY158 4.7 43.9 1.0 N D:ASP159 4.8 47.4 1.0 PA D:ADP401 4.9 45.4 1.0 CA D:GLY15 5.0 47.7 1.0

Magnesium binding site 5 out of 11 in the Cryo-Em Structure of F-Actin/PLASTIN2-ABD2 Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Cryo-Em Structure of F-Actin/PLASTIN2-ABD2 Complex within 5.0Å range: probe atom residue distance (Å) B Occ E:Mg402 b:47.4 occ:1.00 O1B E:ADP401 2.0 53.1 1.0 PB E:ADP401 3.0 53.1 1.0 OE1 E:GLN139 3.0 56.2 1.0 O3B E:ADP401 3.1 53.1 1.0 OD2 E:ASP156 3.4 55.4 1.0 CD E:GLN139 3.9 56.2 1.0 O3A E:ADP401 3.9 53.1 1.0 OD1 E:ASP156 4.0 55.4 1.0 CG E:ASP156 4.1 55.4 1.0 CA E:GLY158 4.1 52.6 1.0 NE2 E:GLN139 4.2 56.2 1.0 O2B E:ADP401 4.2 53.1 1.0 O1A E:ADP401 4.3 53.1 1.0 N E:GLY158 4.7 52.6 1.0 N E:ASP159 4.8 55.2 1.0 PA E:ADP401 4.9 53.1 1.0 CA E:GLY15 5.0 53.2 1.0

Magnesium binding site 6 out of 11 in the Cryo-Em Structure of F-Actin/PLASTIN2-ABD2 Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Cryo-Em Structure of F-Actin/PLASTIN2-ABD2 Complex within 5.0Å range: probe atom residue distance (Å) B Occ F:Mg402 b:41.8 occ:1.00 O1B F:ADP401 2.0 51.9 1.0 PB F:ADP401 3.0 51.9 1.0 OE1 F:GLN139 3.0 50.8 1.0 O3B F:ADP401 3.1 51.9 1.0 OD2 F:ASP156 3.4 50.2 1.0 CD F:GLN139 3.9 50.8 1.0 O3A F:ADP401 3.9 51.9 1.0 OD1 F:ASP156 4.0 50.2 1.0 CG F:ASP156 4.1 50.2 1.0 CA F:GLY158 4.1 49.9 1.0 NE2 F:GLN139 4.2 50.8 1.0 O2B F:ADP401 4.2 51.9 1.0 O1A F:ADP401 4.3 51.9 1.0 N F:GLY158 4.7 49.9 1.0 N F:ASP159 4.8 53.3 1.0 PA F:ADP401 4.9 51.9 1.0 CA F:GLY15 5.0 53.2 1.0

Magnesium binding site 7 out of 11 in the Cryo-Em Structure of F-Actin/PLASTIN2-ABD2 Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Cryo-Em Structure of F-Actin/PLASTIN2-ABD2 Complex within 5.0Å range: probe atom residue distance (Å) B Occ G:Mg402 b:72.5 occ:1.00 O1B G:ADP401 2.0 67.5 1.0 PB G:ADP401 3.0 67.5 1.0 OE1 G:GLN139 3.0 73.8 1.0 O3B G:ADP401 3.1 67.5 1.0 OD2 G:ASP156 3.4 73.8 1.0 CD G:GLN139 3.9 73.8 1.0 O3A G:ADP401 3.9 67.5 1.0 OD1 G:ASP156 4.0 73.8 1.0 CG G:ASP156 4.1 73.8 1.0 CA G:GLY158 4.1 68.4 1.0 NE2 G:GLN139 4.2 73.8 1.0 O2B G:ADP401 4.2 67.5 1.0 O1A G:ADP401 4.3 67.5 1.0 N G:GLY158 4.7 68.4 1.0 N G:ASP159 4.8 69.2 1.0 PA G:ADP401 4.9 67.5 1.0 CA G:GLY15 5.0 68.5 1.0

Magnesium binding site 8 out of 11 in the Cryo-Em Structure of F-Actin/PLASTIN2-ABD2 Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of Cryo-Em Structure of F-Actin/PLASTIN2-ABD2 Complex within 5.0Å range: probe atom residue distance (Å) B Occ H:Mg402 b:61.0 occ:1.00 O1B H:ADP401 2.0 67.7 1.0 PB H:ADP401 3.0 67.7 1.0 OE1 H:GLN139 3.0 62.1 1.0 O3B H:ADP401 3.1 67.7 1.0 OD2 H:ASP156 3.4 61.4 1.0 CD H:GLN139 3.9 62.1 1.0 O3A H:ADP401 3.9 67.7 1.0 OD1 H:ASP156 4.0 61.4 1.0 CG H:ASP156 4.1 61.4 1.0 CA H:GLY158 4.1 64.2 1.0 NE2 H:GLN139 4.2 62.1 1.0 O2B H:ADP401 4.2 67.7 1.0 O1A H:ADP401 4.3 67.7 1.0 N H:GLY158 4.7 64.2 1.0 N H:ASP159 4.8 68.4 1.0 PA H:ADP401 4.9 67.7 1.0 CA H:GLY15 5.0 70.4 1.0

Magnesium binding site 9 out of 11 in the Cryo-Em Structure of F-Actin/PLASTIN2-ABD2 Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 9 of Cryo-Em Structure of F-Actin/PLASTIN2-ABD2 Complex within 5.0Å range: probe atom residue distance (Å) B Occ I:Mg402 b:94.1 occ:1.00 O1B I:ADP401 2.0 94.2 1.0 PB I:ADP401 3.0 94.2 1.0 OE1 I:GLN139 3.0 98.6 1.0 O3B I:ADP401 3.1 94.2 1.0 OD2 I:ASP156 3.4 0.5 1.0 CD I:GLN139 3.9 98.6 1.0 O3A I:ADP401 3.9 94.2 1.0 OD1 I:ASP156 4.0 0.5 1.0 CG I:ASP156 4.1 0.5 1.0 CA I:GLY158 4.1 95.5 1.0 NE2 I:GLN139 4.2 98.6 1.0 O2B I:ADP401 4.2 94.2 1.0 O1A I:ADP401 4.3 94.2 1.0 N I:GLY158 4.7 95.5 1.0 N I:ASP159 4.8 96.0 1.0 PA I:ADP401 4.9 94.2 1.0 CA I:GLY15 5.0 93.9 1.0

Magnesium binding site 10 out of 11 in the Cryo-Em Structure of F-Actin/PLASTIN2-ABD2 Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 10 of Cryo-Em Structure of F-Actin/PLASTIN2-ABD2 Complex within 5.0Å range: probe atom residue distance (Å) B Occ J:Mg402 b:79.4 occ:1.00 O1B J:ADP401 2.0 93.8 1.0 PB J:ADP401 3.0 93.8 1.0 OE1 J:GLN139 3.0 84.3 1.0 O3B J:ADP401 3.1 93.8 1.0 OD2 J:ASP156 3.4 83.8 1.0 CD J:GLN139 3.9 84.3 1.0 O3A J:ADP401 3.9 93.8 1.0 OD1 J:ASP156 4.0 83.8 1.0 CG J:ASP156 4.1 83.8 1.0 CA J:GLY158 4.1 88.9 1.0 NE2 J:GLN139 4.2 84.3 1.0 O2B J:ADP401 4.2 93.8 1.0 O1A J:ADP401 4.3 93.8 1.0 N J:GLY158 4.7 88.9 1.0 N J:ASP159 4.8 94.3 1.0 PA J:ADP401 4.9 93.8 1.0 CA J:GLY15 5.0 94.6 1.0

W.Zheng, D.S.Kudryashov, E.H.Egelman. Cryo-Em Structure of F-Actin/PLASTIN2-ABD2 Complex To Be Published.