Atomistry » Magnesium » PDB 6vcl-6vno » 6vec
Atomistry »
  Magnesium »
    PDB 6vcl-6vno »
      6vec »

Magnesium in PDB 6vec: Cryo-Em Structure of F-Actin/PLASTIN2-ABD2 Complex

Magnesium Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 11;

Binding sites:

The binding sites of Magnesium atom in the Cryo-Em Structure of F-Actin/PLASTIN2-ABD2 Complex (pdb code 6vec). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 11 binding sites of Magnesium where determined in the Cryo-Em Structure of F-Actin/PLASTIN2-ABD2 Complex, PDB code: 6vec:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Magnesium binding site 1 out of 11 in 6vec

Go back to Magnesium Binding Sites List in 6vec
Magnesium binding site 1 out of 11 in the Cryo-Em Structure of F-Actin/PLASTIN2-ABD2 Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of F-Actin/PLASTIN2-ABD2 Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg402

b:35.7
occ:1.00
O1B A:ADP401 2.0 46.8 1.0
PB A:ADP401 3.0 46.8 1.0
OE1 A:GLN139 3.0 46.4 1.0
O3B A:ADP401 3.1 46.8 1.0
OD2 A:ASP156 3.4 47.6 1.0
CD A:GLN139 3.9 46.4 1.0
O3A A:ADP401 3.9 46.8 1.0
OD1 A:ASP156 4.0 47.6 1.0
CG A:ASP156 4.1 47.6 1.0
CA A:GLY158 4.1 46.8 1.0
NE2 A:GLN139 4.2 46.4 1.0
O2B A:ADP401 4.2 46.8 1.0
O1A A:ADP401 4.3 46.8 1.0
N A:GLY158 4.7 46.8 1.0
N A:ASP159 4.8 50.4 1.0
PA A:ADP401 4.9 46.8 1.0
CA A:GLY15 5.0 47.1 1.0

Magnesium binding site 2 out of 11 in 6vec

Go back to Magnesium Binding Sites List in 6vec
Magnesium binding site 2 out of 11 in the Cryo-Em Structure of F-Actin/PLASTIN2-ABD2 Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryo-Em Structure of F-Actin/PLASTIN2-ABD2 Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg402

b:74.3
occ:1.00
O1B B:ADP401 2.0 49.2 1.0
PB B:ADP401 3.0 49.2 1.0
OE1 B:GLN139 3.0 47.8 1.0
O3B B:ADP401 3.1 49.2 1.0
OD2 B:ASP156 3.4 47.5 1.0
CD B:GLN139 3.9 47.8 1.0
O3A B:ADP401 3.9 49.2 1.0
OD1 B:ASP156 4.0 47.5 1.0
CG B:ASP156 4.1 47.5 1.0
CA B:GLY158 4.1 47.6 1.0
NE2 B:GLN139 4.2 47.8 1.0
O2B B:ADP401 4.2 49.2 1.0
O1A B:ADP401 4.3 49.2 1.0
N B:GLY158 4.7 47.6 1.0
N B:ASP159 4.8 50.5 1.0
PA B:ADP401 4.9 49.2 1.0
CA B:GLY15 5.0 47.8 1.0

Magnesium binding site 3 out of 11 in 6vec

Go back to Magnesium Binding Sites List in 6vec
Magnesium binding site 3 out of 11 in the Cryo-Em Structure of F-Actin/PLASTIN2-ABD2 Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Cryo-Em Structure of F-Actin/PLASTIN2-ABD2 Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg402

b:41.3
occ:1.00
O1B C:ADP401 2.0 48.1 1.0
PB C:ADP401 3.0 48.1 1.0
OE1 C:GLN139 3.0 48.5 1.0
O3B C:ADP401 3.1 48.1 1.0
OD2 C:ASP156 3.4 48.7 1.0
CD C:GLN139 3.9 48.5 1.0
O3A C:ADP401 3.9 48.1 1.0
OD1 C:ASP156 4.0 48.7 1.0
CG C:ASP156 4.1 48.7 1.0
CA C:GLY158 4.1 47.7 1.0
NE2 C:GLN139 4.2 48.5 1.0
O2B C:ADP401 4.2 48.1 1.0
O1A C:ADP401 4.3 48.1 1.0
N C:GLY158 4.7 47.7 1.0
N C:ASP159 4.8 51.3 1.0
PA C:ADP401 4.9 48.1 1.0
CA C:GLY15 5.0 49.5 1.0

Magnesium binding site 4 out of 11 in 6vec

Go back to Magnesium Binding Sites List in 6vec
Magnesium binding site 4 out of 11 in the Cryo-Em Structure of F-Actin/PLASTIN2-ABD2 Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Cryo-Em Structure of F-Actin/PLASTIN2-ABD2 Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg402

b:35.2
occ:1.00
O1B D:ADP401 2.0 45.4 1.0
PB D:ADP401 3.0 45.4 1.0
OE1 D:GLN139 3.0 46.9 1.0
O3B D:ADP401 3.1 45.4 1.0
OD2 D:ASP156 3.4 44.8 1.0
CD D:GLN139 3.9 46.9 1.0
O3A D:ADP401 3.9 45.4 1.0
OD1 D:ASP156 4.0 44.8 1.0
CG D:ASP156 4.1 44.8 1.0
CA D:GLY158 4.1 43.9 1.0
NE2 D:GLN139 4.2 46.9 1.0
O2B D:ADP401 4.2 45.4 1.0
O1A D:ADP401 4.3 45.4 1.0
N D:GLY158 4.7 43.9 1.0
N D:ASP159 4.8 47.4 1.0
PA D:ADP401 4.9 45.4 1.0
CA D:GLY15 5.0 47.7 1.0

Magnesium binding site 5 out of 11 in 6vec

Go back to Magnesium Binding Sites List in 6vec
Magnesium binding site 5 out of 11 in the Cryo-Em Structure of F-Actin/PLASTIN2-ABD2 Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Cryo-Em Structure of F-Actin/PLASTIN2-ABD2 Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Mg402

b:47.4
occ:1.00
O1B E:ADP401 2.0 53.1 1.0
PB E:ADP401 3.0 53.1 1.0
OE1 E:GLN139 3.0 56.2 1.0
O3B E:ADP401 3.1 53.1 1.0
OD2 E:ASP156 3.4 55.4 1.0
CD E:GLN139 3.9 56.2 1.0
O3A E:ADP401 3.9 53.1 1.0
OD1 E:ASP156 4.0 55.4 1.0
CG E:ASP156 4.1 55.4 1.0
CA E:GLY158 4.1 52.6 1.0
NE2 E:GLN139 4.2 56.2 1.0
O2B E:ADP401 4.2 53.1 1.0
O1A E:ADP401 4.3 53.1 1.0
N E:GLY158 4.7 52.6 1.0
N E:ASP159 4.8 55.2 1.0
PA E:ADP401 4.9 53.1 1.0
CA E:GLY15 5.0 53.2 1.0

Magnesium binding site 6 out of 11 in 6vec

Go back to Magnesium Binding Sites List in 6vec
Magnesium binding site 6 out of 11 in the Cryo-Em Structure of F-Actin/PLASTIN2-ABD2 Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Cryo-Em Structure of F-Actin/PLASTIN2-ABD2 Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Mg402

b:41.8
occ:1.00
O1B F:ADP401 2.0 51.9 1.0
PB F:ADP401 3.0 51.9 1.0
OE1 F:GLN139 3.0 50.8 1.0
O3B F:ADP401 3.1 51.9 1.0
OD2 F:ASP156 3.4 50.2 1.0
CD F:GLN139 3.9 50.8 1.0
O3A F:ADP401 3.9 51.9 1.0
OD1 F:ASP156 4.0 50.2 1.0
CG F:ASP156 4.1 50.2 1.0
CA F:GLY158 4.1 49.9 1.0
NE2 F:GLN139 4.2 50.8 1.0
O2B F:ADP401 4.2 51.9 1.0
O1A F:ADP401 4.3 51.9 1.0
N F:GLY158 4.7 49.9 1.0
N F:ASP159 4.8 53.3 1.0
PA F:ADP401 4.9 51.9 1.0
CA F:GLY15 5.0 53.2 1.0

Magnesium binding site 7 out of 11 in 6vec

Go back to Magnesium Binding Sites List in 6vec
Magnesium binding site 7 out of 11 in the Cryo-Em Structure of F-Actin/PLASTIN2-ABD2 Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Cryo-Em Structure of F-Actin/PLASTIN2-ABD2 Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Mg402

b:72.5
occ:1.00
O1B G:ADP401 2.0 67.5 1.0
PB G:ADP401 3.0 67.5 1.0
OE1 G:GLN139 3.0 73.8 1.0
O3B G:ADP401 3.1 67.5 1.0
OD2 G:ASP156 3.4 73.8 1.0
CD G:GLN139 3.9 73.8 1.0
O3A G:ADP401 3.9 67.5 1.0
OD1 G:ASP156 4.0 73.8 1.0
CG G:ASP156 4.1 73.8 1.0
CA G:GLY158 4.1 68.4 1.0
NE2 G:GLN139 4.2 73.8 1.0
O2B G:ADP401 4.2 67.5 1.0
O1A G:ADP401 4.3 67.5 1.0
N G:GLY158 4.7 68.4 1.0
N G:ASP159 4.8 69.2 1.0
PA G:ADP401 4.9 67.5 1.0
CA G:GLY15 5.0 68.5 1.0

Magnesium binding site 8 out of 11 in 6vec

Go back to Magnesium Binding Sites List in 6vec
Magnesium binding site 8 out of 11 in the Cryo-Em Structure of F-Actin/PLASTIN2-ABD2 Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of Cryo-Em Structure of F-Actin/PLASTIN2-ABD2 Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
H:Mg402

b:61.0
occ:1.00
O1B H:ADP401 2.0 67.7 1.0
PB H:ADP401 3.0 67.7 1.0
OE1 H:GLN139 3.0 62.1 1.0
O3B H:ADP401 3.1 67.7 1.0
OD2 H:ASP156 3.4 61.4 1.0
CD H:GLN139 3.9 62.1 1.0
O3A H:ADP401 3.9 67.7 1.0
OD1 H:ASP156 4.0 61.4 1.0
CG H:ASP156 4.1 61.4 1.0
CA H:GLY158 4.1 64.2 1.0
NE2 H:GLN139 4.2 62.1 1.0
O2B H:ADP401 4.2 67.7 1.0
O1A H:ADP401 4.3 67.7 1.0
N H:GLY158 4.7 64.2 1.0
N H:ASP159 4.8 68.4 1.0
PA H:ADP401 4.9 67.7 1.0
CA H:GLY15 5.0 70.4 1.0

Magnesium binding site 9 out of 11 in 6vec

Go back to Magnesium Binding Sites List in 6vec
Magnesium binding site 9 out of 11 in the Cryo-Em Structure of F-Actin/PLASTIN2-ABD2 Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 9 of Cryo-Em Structure of F-Actin/PLASTIN2-ABD2 Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
I:Mg402

b:94.1
occ:1.00
O1B I:ADP401 2.0 94.2 1.0
PB I:ADP401 3.0 94.2 1.0
OE1 I:GLN139 3.0 98.6 1.0
O3B I:ADP401 3.1 94.2 1.0
OD2 I:ASP156 3.4 0.5 1.0
CD I:GLN139 3.9 98.6 1.0
O3A I:ADP401 3.9 94.2 1.0
OD1 I:ASP156 4.0 0.5 1.0
CG I:ASP156 4.1 0.5 1.0
CA I:GLY158 4.1 95.5 1.0
NE2 I:GLN139 4.2 98.6 1.0
O2B I:ADP401 4.2 94.2 1.0
O1A I:ADP401 4.3 94.2 1.0
N I:GLY158 4.7 95.5 1.0
N I:ASP159 4.8 96.0 1.0
PA I:ADP401 4.9 94.2 1.0
CA I:GLY15 5.0 93.9 1.0

Magnesium binding site 10 out of 11 in 6vec

Go back to Magnesium Binding Sites List in 6vec
Magnesium binding site 10 out of 11 in the Cryo-Em Structure of F-Actin/PLASTIN2-ABD2 Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 10 of Cryo-Em Structure of F-Actin/PLASTIN2-ABD2 Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
J:Mg402

b:79.4
occ:1.00
O1B J:ADP401 2.0 93.8 1.0
PB J:ADP401 3.0 93.8 1.0
OE1 J:GLN139 3.0 84.3 1.0
O3B J:ADP401 3.1 93.8 1.0
OD2 J:ASP156 3.4 83.8 1.0
CD J:GLN139 3.9 84.3 1.0
O3A J:ADP401 3.9 93.8 1.0
OD1 J:ASP156 4.0 83.8 1.0
CG J:ASP156 4.1 83.8 1.0
CA J:GLY158 4.1 88.9 1.0
NE2 J:GLN139 4.2 84.3 1.0
O2B J:ADP401 4.2 93.8 1.0
O1A J:ADP401 4.3 93.8 1.0
N J:GLY158 4.7 88.9 1.0
N J:ASP159 4.8 94.3 1.0
PA J:ADP401 4.9 93.8 1.0
CA J:GLY15 5.0 94.6 1.0

Reference:

W.Zheng, D.S.Kudryashov, E.H.Egelman. Cryo-Em Structure of F-Actin/PLASTIN2-ABD2 Complex To Be Published.
Page generated: Tue Oct 1 22:01:30 2024

Last articles

Zn in 1DK4
Zn in 1DMT
Zn in 1DMK
Zn in 1DMJ
Zn in 1DM8
Zn in 1DMI
Zn in 1DKH
Zn in 1DM6
Zn in 1DM7
Zn in 1DL6
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy