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Magnesium in PDB 6vjj: Crystal Structure of Wild-Type KRAS4B (Gmppnp-Bound) in Complex with Ras-Binding Domain (Rbd) of RAF1/Craf

Enzymatic activity of Crystal Structure of Wild-Type KRAS4B (Gmppnp-Bound) in Complex with Ras-Binding Domain (Rbd) of RAF1/Craf

All present enzymatic activity of Crystal Structure of Wild-Type KRAS4B (Gmppnp-Bound) in Complex with Ras-Binding Domain (Rbd) of RAF1/Craf:
2.7.11.1;

Protein crystallography data

The structure of Crystal Structure of Wild-Type KRAS4B (Gmppnp-Bound) in Complex with Ras-Binding Domain (Rbd) of RAF1/Craf, PDB code: 6vjj was solved by T.H.Tran, S.Dharmaiah, D.K.Simanshu, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 49.03 / 1.40
Space group P 2 21 21
Cell size a, b, c (Å), α, β, γ (°) 44.132, 67.572, 71.260, 90.00, 90.00, 90.00
R / Rfree (%) 16.5 / 19.5

Other elements in 6vjj:

The structure of Crystal Structure of Wild-Type KRAS4B (Gmppnp-Bound) in Complex with Ras-Binding Domain (Rbd) of RAF1/Craf also contains other interesting chemical elements:

Chlorine (Cl) 3 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Wild-Type KRAS4B (Gmppnp-Bound) in Complex with Ras-Binding Domain (Rbd) of RAF1/Craf (pdb code 6vjj). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of Wild-Type KRAS4B (Gmppnp-Bound) in Complex with Ras-Binding Domain (Rbd) of RAF1/Craf, PDB code: 6vjj:

Magnesium binding site 1 out of 1 in 6vjj

Go back to Magnesium Binding Sites List in 6vjj
Magnesium binding site 1 out of 1 in the Crystal Structure of Wild-Type KRAS4B (Gmppnp-Bound) in Complex with Ras-Binding Domain (Rbd) of RAF1/Craf


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Wild-Type KRAS4B (Gmppnp-Bound) in Complex with Ras-Binding Domain (Rbd) of RAF1/Craf within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg201

b:10.8
occ:1.00
 O2G A:GNP202 2.0 11.9 1.0
O2B A:GNP202 2.0 10.2 1.0
O A:HOH325 2.1 12.5 1.0
OG1 A:THR35 2.1 12.0 1.0
OG A:SER17 2.1 11.3 1.0
O A:HOH319 2.1 11.7 1.0
CB A:THR35 3.1 11.6 1.0
CB A:SER17 3.2 11.4 1.0
PG A:GNP202 3.2 11.4 1.0
PB A:GNP202 3.2 10.5 1.0
N3B A:GNP202 3.4 11.0 1.0
N A:THR35 3.7 11.4 1.0
N A:SER17 3.8 10.6 1.0
CA A:THR35 4.0 12.8 1.0
OD2 A:ASP57 4.0 15.9 1.0
CA A:SER17 4.1 10.5 1.0
O3G A:GNP202 4.1 13.4 1.0
O2A A:GNP202 4.1 13.0 1.0
O A:HOH312 4.2 17.1 1.0
CG2 A:THR35 4.2 13.2 1.0
O1B A:GNP202 4.3 11.0 1.0
OD1 A:ASP57 4.3 14.7 1.0
O1G A:GNP202 4.3 12.6 1.0
O3A A:GNP202 4.3 11.9 1.0
O A:THR58 4.5 13.1 1.0
O A:ASP33 4.5 14.9 1.0
PA A:GNP202 4.5 11.6 1.0
CG A:ASP57 4.5 15.1 1.0
C A:PRO34 4.7 15.6 1.0
O1A A:GNP202 4.7 12.7 1.0
CB A:LYS16 4.7 9.6 1.0
C A:LYS16 4.9 10.1 1.0
CE A:LYS16 4.9 12.0 1.0
CA A:PRO34 5.0 15.6 1.0

Reference:

T.H.Tran, D.K.Simanshu. Crystal Structure of Wild-Type KRAS4B (Gmppnp-Bound) in Complex with Ras-Binding Domain (Rbd) of RAF1/Craf To Be Published.
Page generated: Tue Oct 1 22:06:04 2024

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