Magnesium in PDB 6voy: Cryo-Em Structure of Htlv-1 Instasome

The structure of Cryo-Em Structure of Htlv-1 Instasome also contains other interesting chemical elements:

Zinc

(Zn)

4 atoms

The binding sites of Magnesium atom in the Cryo-Em Structure of Htlv-1 Instasome (pdb code 6voy). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Cryo-Em Structure of Htlv-1 Instasome, PDB code: 6voy:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Cryo-Em Structure of Htlv-1 Instasome


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of Htlv-1 Instasome within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg302 b:0.0 occ:1.00 OD2 A:ASP63 2.0 72.6 1.0 OD2 A:ASP120 2.1 90.3 1.0 OD1 A:ASP120 2.4 90.3 1.0 OD1 A:ASP63 2.4 72.6 1.0 CG A:ASP63 2.5 72.6 1.0 CG A:ASP120 2.6 90.3 1.0 CB A:ASP63 3.8 72.6 1.0 CB A:ASP120 4.0 90.3 1.0 O3' K:DG18 4.2 0.3 1.0 CG2 A:ILE64 4.3 71.5 1.0 N A:ILE64 4.4 71.5 1.0 CA A:ASP63 4.5 72.6 1.0 O A:ILE64 4.5 71.5 1.0 CE2 A:TYR125 4.6 83.6 1.0 OP2 L:DG24 4.7 0.5 1.0 N A:ASP120 4.9 90.3 1.0 CA A:ASP120 5.0 90.3 1.0 C A:ASP63 5.0 72.6 1.0

Magnesium binding site 2 out of 2 in the Cryo-Em Structure of Htlv-1 Instasome


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryo-Em Structure of Htlv-1 Instasome within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg302 b:89.2 occ:1.00 OD2 C:ASP63 2.2 71.3 1.0 OD1 C:ASP63 2.5 71.3 1.0 CG C:ASP63 2.7 71.3 1.0 OP2 I:DG24 2.8 0.0 1.0 O3' N:DG18 3.1 0.2 1.0 O C:ILE64 3.9 72.3 1.0 CB C:ASP63 4.2 71.3 1.0 P I:DG24 4.2 0.0 1.0 CG2 C:ILE64 4.3 72.3 1.0 C3' N:DG18 4.3 0.2 1.0 N C:ILE64 4.5 72.3 1.0 O3' I:DA23 4.8 84.6 1.0 NE2 C:GLN156 4.8 69.2 1.0 O5' I:DG24 4.8 0.0 1.0 CB C:ASP120 4.8 98.4 1.0 CA C:ASP63 4.9 71.3 1.0 C C:ILE64 5.0 72.3 1.0 OD2 C:ASP120 5.0 98.4 1.0

V.Bhatt, K.Shi, D.J.Salamango, N.H.Moeller, K.K.Pandey, S.Bera, T.E.Bohl, F.Kurniawan, K.Orellana, W.Zhang, D.P.Grandgenett, R.S.Harris, A.C.Sundborger-Lunna, H.Aihara. Structural Basis of Host Protein Hijacking in Human T-Cell Leukemia Virus Integration. Nat Commun V. 11 3121 2020.
ISSN: ESSN 2041-1723
PubMed: 32561747
DOI: 10.1038/S41467-020-16963-6