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Magnesium in PDB 6vp6: Cryo-Em Structure of the C-Terminal Half of the Parkinson'S Disease- Linked Protein Leucine Rich Repeat Kinase 2 (LRRK2)

Enzymatic activity of Cryo-Em Structure of the C-Terminal Half of the Parkinson'S Disease- Linked Protein Leucine Rich Repeat Kinase 2 (LRRK2)

All present enzymatic activity of Cryo-Em Structure of the C-Terminal Half of the Parkinson'S Disease- Linked Protein Leucine Rich Repeat Kinase 2 (LRRK2):
2.7.11.1;

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Cryo-Em Structure of the C-Terminal Half of the Parkinson'S Disease- Linked Protein Leucine Rich Repeat Kinase 2 (LRRK2) (pdb code 6vp6). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Cryo-Em Structure of the C-Terminal Half of the Parkinson'S Disease- Linked Protein Leucine Rich Repeat Kinase 2 (LRRK2), PDB code: 6vp6:

Magnesium binding site 1 out of 1 in 6vp6

Go back to Magnesium Binding Sites List in 6vp6
Magnesium binding site 1 out of 1 in the Cryo-Em Structure of the C-Terminal Half of the Parkinson'S Disease- Linked Protein Leucine Rich Repeat Kinase 2 (LRRK2)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of the C-Terminal Half of the Parkinson'S Disease- Linked Protein Leucine Rich Repeat Kinase 2 (LRRK2) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg2602

b:80.8
occ:1.00
O1B A:GDP2601 2.0 76.7 1.0
OG1 A:THR1348 2.4 76.9 1.0
PB A:GDP2601 3.2 74.0 1.0
O1A A:GDP2601 3.3 94.2 1.0
CB A:THR1348 3.3 81.5 1.0
O3A A:GDP2601 3.5 81.1 1.0
PA A:GDP2601 3.6 80.4 1.0
O2A A:GDP2601 3.7 83.8 1.0
O3B A:GDP2601 4.0 76.3 1.0
CB A:ALA1396 4.1 84.8 1.0
CG2 A:THR1348 4.3 82.6 1.0
CA A:ALA1396 4.4 79.7 1.0
O2B A:GDP2601 4.4 78.6 1.0
N A:THR1348 4.4 89.7 1.0
CA A:THR1348 4.5 89.5 1.0
NZ A:LYS1347 4.5 74.0 1.0
OD2 A:ASP1394 4.7 81.6 1.0
O A:ALA1396 4.8 81.2 1.0
OD1 A:ASP1394 4.9 72.9 1.0
C A:ALA1396 5.0 80.1 1.0
CG A:LYS1347 5.0 76.6 1.0

Reference:

C.K.Deniston, J.Salogiannis, S.Mathea, D.M.Snead, I.Lahiri, M.Matyszewski, O.Donosa, R.Watanabe, J.Bohning, A.K.Shiau, S.Knapp, E.Villa, S.L.Reck-Peterson, A.E.Leschziner. Structure of LRRK2 in Parkinson'S Disease and Model For Microtubule Interaction. Nature 2020.
ISSN: ESSN 1476-4687
PubMed: 32814344
DOI: 10.1038/S41586-020-2673-2
Page generated: Tue Oct 1 22:11:26 2024

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