Magnesium in PDB 6vpc: Structure of the SPCAS9 Dna Adenine Base Editor - ABE8E

The structure of Structure of the SPCAS9 Dna Adenine Base Editor - ABE8E also contains other interesting chemical elements:

Zinc

(Zn)

2 atoms

The binding sites of Magnesium atom in the Structure of the SPCAS9 Dna Adenine Base Editor - ABE8E (pdb code 6vpc). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 3 binding sites of Magnesium where determined in the Structure of the SPCAS9 Dna Adenine Base Editor - ABE8E, PDB code: 6vpc:
Jump to Magnesium binding site number: 1; 2; 3;

Magnesium binding site 1 out of 3 in the Structure of the SPCAS9 Dna Adenine Base Editor - ABE8E


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of the SPCAS9 Dna Adenine Base Editor - ABE8E within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg101 b:38.3 occ:1.00 OP2 A:U46 4.2 50.0 1.0 OP2 A:A47 4.2 40.9 1.0 C5 A:U46 4.9 50.0 1.0 OP2 A:G22 4.9 51.8 1.0

Magnesium binding site 2 out of 3 in the Structure of the SPCAS9 Dna Adenine Base Editor - ABE8E


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Structure of the SPCAS9 Dna Adenine Base Editor - ABE8E within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg102 b:35.9 occ:1.00 OP1 A:U51 2.5 44.4 1.0 P A:U51 3.9 44.4 1.0 OP1 A:A53 4.1 43.7 1.0 O6 A:G54 4.4 46.1 1.0 O6 A:G63 4.4 40.9 1.0 N7 A:G54 4.6 46.1 1.0 OP2 A:U51 4.7 44.4 1.0 O3' A:A50 4.8 50.2 1.0 O5' A:U51 4.8 44.4 1.0 NZ B:LYS1320 4.8 45.0 1.0 OP1 A:A52 4.9 44.5 1.0

Magnesium binding site 3 out of 3 in the Structure of the SPCAS9 Dna Adenine Base Editor - ABE8E


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Structure of the SPCAS9 Dna Adenine Base Editor - ABE8E within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg103 b:54.7 occ:1.00 OG1 B:THR1299 2.4 44.2 1.0 OP2 A:A66 3.0 39.7 1.0 CB B:THR1299 3.7 44.2 1.0 OP1 A:U65 3.9 43.7 1.0 CG2 B:THR1299 4.1 44.2 1.0 O4 A:U67 4.2 46.4 1.0 P A:A66 4.3 39.7 1.0 OP2 A:U65 4.6 43.7 1.0 P A:U65 4.7 43.7 1.0 CA B:THR1299 4.7 44.2 1.0 N B:THR1299 4.8 44.2 1.0 C5 A:U67 4.9 46.4 1.0 OP1 A:A66 4.9 39.7 1.0 C4 A:U67 4.9 46.4 1.0 O5' A:A66 4.9 39.7 1.0

A.Lapinaite, G.J.Knott, C.M.Palumbo, E.Lin-Shiao, M.F.Richter, K.T.Zhao, P.A.Beal, D.R.Liu, J.A.Doudna. Dna Capture By A Crispr-CAS9-Guided Adenine Base Editor. Science V. 369 566 2020.
ISSN: ESSN 1095-9203
PubMed: 32732424
DOI: 10.1126/SCIENCE.ABB1390