Magnesium in PDB 6vpo: Cryo-Em Structure of Microtubule-Bound KLP61F Motor Domain in the Amppnp State

The binding sites of Magnesium atom in the Cryo-Em Structure of Microtubule-Bound KLP61F Motor Domain in the Amppnp State (pdb code 6vpo). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Cryo-Em Structure of Microtubule-Bound KLP61F Motor Domain in the Amppnp State, PDB code: 6vpo:

Magnesium binding site 1 out of 1 in the Cryo-Em Structure of Microtubule-Bound KLP61F Motor Domain in the Amppnp State


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of Microtubule-Bound KLP61F Motor Domain in the Amppnp State within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg501 b:0.8 occ:1.00 O3A A:GTP501 2.0 0.1 1.0 O1G A:GTP501 2.1 0.1 1.0 O3G A:GTP501 2.2 0.1 1.0 O1B A:GTP501 2.3 0.1 1.0 PG A:GTP501 2.3 0.1 1.0 PB A:GTP501 2.3 0.1 1.0 O3B A:GTP501 2.7 0.1 1.0 PA A:GTP501 3.4 0.1 1.0 NZ B:LYS254 3.4 0.4 1.0 C5' A:GTP501 3.7 0.1 1.0 O2G A:GTP501 3.8 0.1 1.0 O2A A:GTP501 3.8 0.1 1.0 O2B A:GTP501 3.8 0.1 1.0 ND2 A:ASN101 3.9 1.0 1.0 O5' A:GTP501 4.0 0.1 1.0 OE1 A:GLN11 4.3 0.1 1.0 O1A A:GTP501 4.5 0.1 1.0 OD1 A:ASP98 4.6 0.4 1.0 CE B:LYS254 4.8 0.4 1.0 OG1 A:THR145 4.9 0.4 1.0

T.Bodrug, E.M.Wilson-Kubalek, S.Nithianantham, A.F.Thompson, A.Alfieri, I.Gaska, J.Major, G.Debs, S.Inagaki, P.Gutierrez, L.Gheber, R.J.Mckenney, C.V.Sindelar, R.Milligan, J.Stumpff, S.S.Rosenfeld, S.T.Forth, J.Al-Bassam. The Kinesin-5 Tail Domain Directly Modulates the Mechanochemical Cycle of the Motor Domain For Anti-Parallel Microtubule Sliding. Elife V. 9 2020.
ISSN: ESSN 2050-084X
PubMed: 31958056
DOI: 10.7554/ELIFE.51131