Magnesium in PDB 6vpp: Cryo-Em Structure of Microtubule-Bound KLP61F Motor with Tail Domain in the Nucleotide-Free State

The binding sites of Magnesium atom in the Cryo-Em Structure of Microtubule-Bound KLP61F Motor with Tail Domain in the Nucleotide-Free State (pdb code 6vpp). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Cryo-Em Structure of Microtubule-Bound KLP61F Motor with Tail Domain in the Nucleotide-Free State, PDB code: 6vpp:

Magnesium binding site 1 out of 1 in the Cryo-Em Structure of Microtubule-Bound KLP61F Motor with Tail Domain in the Nucleotide-Free State


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of Microtubule-Bound KLP61F Motor with Tail Domain in the Nucleotide-Free State within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg502 b:0.8 occ:1.00 OE1 A:GLU71 2.1 0.4 1.0 O2G A:GTP501 2.1 0.8 1.0 O3B A:GTP501 2.1 0.8 1.0 CD A:GLU71 2.4 0.4 1.0 OE2 A:GLU71 2.4 0.4 1.0 PG A:GTP501 2.4 0.8 1.0 OE1 A:GLN11 3.0 0.1 1.0 NZ B:LYS254 3.0 0.8 1.0 O1G A:GTP501 3.1 0.8 1.0 CB A:GLN11 3.1 0.1 1.0 CG A:GLU71 3.6 0.4 1.0 PB A:GTP501 3.7 0.8 1.0 CD A:GLN11 3.8 0.1 1.0 O3G A:GTP501 3.8 0.8 1.0 N A:GLN11 3.9 0.1 1.0 CG A:GLN11 3.9 0.1 1.0 CA A:GLN11 4.1 0.1 1.0 O2B A:GTP501 4.2 0.8 1.0 O1B A:GTP501 4.4 0.8 1.0 O B:ASN249 4.4 0.4 1.0 CE B:LYS254 4.5 0.8 1.0 O2A A:GTP501 4.5 0.8 1.0 O3A A:GTP501 4.5 0.8 1.0 OD1 A:ASP98 4.7 0.1 1.0 CB A:GLU71 4.7 0.4 1.0 PA A:GTP501 4.9 0.8 1.0 O1A A:GTP501 4.9 0.8 1.0 OG1 A:THR145 4.9 0.3 1.0 C A:GLY10 4.9 1.0 1.0 NE2 A:GLN11 5.0 0.1 1.0

T.Bodrug, E.M.Wilson-Kubalek, S.Nithianantham, A.F.Thompson, A.Alfieri, I.Gaska, J.Major, G.Debs, S.Inagaki, P.Gutierrez, L.Gheber, R.J.Mckenney, C.V.Sindelar, R.Milligan, J.Stumpff, S.S.Rosenfeld, S.T.Forth, J.Al-Bassam. The Kinesin-5 Tail Domain Directly Modulates the Mechanochemical Cycle of the Motor Domain For Anti-Parallel Microtubule Sliding. Elife V. 9 2020.
ISSN: ESSN 2050-084X
PubMed: 31958056
DOI: 10.7554/ELIFE.51131