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Magnesium in PDB 6vpv: Trimeric Photosystem I From the High-Light Tolerant Cyanobacteria Cyanobacterium Aponinum

Enzymatic activity of Trimeric Photosystem I From the High-Light Tolerant Cyanobacteria Cyanobacterium Aponinum

All present enzymatic activity of Trimeric Photosystem I From the High-Light Tolerant Cyanobacteria Cyanobacterium Aponinum:
1.97.1.12;

Other elements in 6vpv:

The structure of Trimeric Photosystem I From the High-Light Tolerant Cyanobacteria Cyanobacterium Aponinum also contains other interesting chemical elements:

Iron (Fe) 36 atoms

Magnesium Binding Sites:

Magnesium binding site 1 out of 288 in 6vpv

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Magnesium binding site 1 out of 288 in the Trimeric Photosystem I From the High-Light Tolerant Cyanobacteria Cyanobacterium Aponinum


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Trimeric Photosystem I From the High-Light Tolerant Cyanobacteria Cyanobacterium Aponinum within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg801

b:60.9
occ:1.00
MG A:CL0801 0.0 60.9 1.0
NB A:CL0801 2.0 60.9 1.0
ND A:CL0801 2.0 60.9 1.0
NC A:CL0801 2.1 60.9 1.0
NA A:CL0801 2.1 60.9 1.0
C4D A:CL0801 2.9 60.9 1.0
C1B A:CL0801 3.0 60.9 1.0
C4A A:CL0801 3.0 60.9 1.0
C4B A:CL0801 3.1 60.9 1.0
C1C A:CL0801 3.1 60.9 1.0
NE2 A:HIS676 3.1 61.5 1.0
C1D A:CL0801 3.1 60.9 1.0
C4C A:CL0801 3.1 60.9 1.0
C1A A:CL0801 3.1 60.9 1.0
CHB A:CL0801 3.4 60.9 1.0
CHC A:CL0801 3.4 60.9 1.0
CHA A:CL0801 3.5 60.9 1.0
CAB B:CLA801 3.5 80.1 1.0
CHD A:CL0801 3.5 60.9 1.0
C3B B:CLA801 3.7 80.1 1.0
CHC B:CLA801 3.8 80.1 1.0
CD2 A:HIS676 3.8 61.5 1.0
C4B B:CLA801 3.9 80.1 1.0
CE1 A:HIS676 4.1 61.5 1.0
C3D A:CL0801 4.2 60.9 1.0
C2B A:CL0801 4.3 60.9 1.0
C3B A:CL0801 4.3 60.9 1.0
C2C A:CL0801 4.3 60.9 1.0
C2D A:CL0801 4.3 60.9 1.0
C3A A:CL0801 4.3 60.9 1.0
C3C A:CL0801 4.4 60.9 1.0
C2A A:CL0801 4.4 60.9 1.0
C2B B:CLA801 4.5 80.1 1.0
CBB B:CLA801 4.5 80.1 1.0
NB B:CLA801 4.6 80.1 1.0
C1C B:CLA801 4.6 80.1 1.0
CMA A:CL0801 4.9 60.9 1.0
CBD A:CL0801 4.9 60.9 1.0

Magnesium binding site 2 out of 288 in 6vpv

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Magnesium binding site 2 out of 288 in the Trimeric Photosystem I From the High-Light Tolerant Cyanobacteria Cyanobacterium Aponinum


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Trimeric Photosystem I From the High-Light Tolerant Cyanobacteria Cyanobacterium Aponinum within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg802

b:80.1
occ:1.00
MG A:CLA802 0.0 80.1 1.0
NB A:CLA802 2.0 80.1 1.0
ND A:CLA802 2.0 80.1 1.0
NA A:CLA802 2.1 80.1 1.0
NC A:CLA802 2.1 80.1 1.0
C4D A:CLA802 2.9 80.1 1.0
C1B A:CLA802 3.0 80.1 1.0
C4A A:CLA802 3.0 80.1 1.0
C4B A:CLA802 3.1 80.1 1.0
C1C A:CLA802 3.1 80.1 1.0
C4C A:CLA802 3.1 80.1 1.0
C1D A:CLA802 3.1 80.1 1.0
C1A A:CLA802 3.1 80.1 1.0
CHB A:CLA802 3.4 80.1 1.0
CHC A:CLA802 3.4 80.1 1.0
CHA A:CLA802 3.5 80.1 1.0
SD A:MET684 3.5 63.9 1.0
CHD A:CLA802 3.5 80.1 1.0
NE1 B:TRP589 3.6 64.4 1.0
CZ2 B:TRP589 3.9 64.4 1.0
CE2 B:TRP589 4.1 64.4 1.0
CG A:MET684 4.1 63.9 1.0
CE A:MET684 4.2 63.9 1.0
C2B A:CLA802 4.2 80.1 1.0
C3D A:CLA802 4.2 80.1 1.0
C3B A:CLA802 4.3 80.1 1.0
C2C A:CLA802 4.3 80.1 1.0
C2D A:CLA802 4.3 80.1 1.0
CB A:MET684 4.3 63.9 1.0
C3C A:CLA802 4.3 80.1 1.0
C3A A:CLA802 4.4 80.1 1.0
C2A A:CLA802 4.4 80.1 1.0
CBB A:CLA852 4.5 65.7 1.0
CD1 B:TRP589 4.8 64.4 1.0
CMC A:CLA852 4.9 65.7 1.0
CAA A:CLA802 4.9 80.1 1.0
CBD A:CLA802 4.9 80.1 1.0

Magnesium binding site 3 out of 288 in 6vpv

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Magnesium binding site 3 out of 288 in the Trimeric Photosystem I From the High-Light Tolerant Cyanobacteria Cyanobacterium Aponinum


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Trimeric Photosystem I From the High-Light Tolerant Cyanobacteria Cyanobacterium Aponinum within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg803

b:80.1
occ:1.00
MG A:CLA803 0.0 80.1 1.0
NB A:CLA803 2.0 80.1 1.0
ND A:CLA803 2.0 80.1 1.0
NC A:CLA803 2.1 80.1 1.0
NA A:CLA803 2.1 80.1 1.0
C4D A:CLA803 2.9 80.1 1.0
C1B A:CLA803 3.0 80.1 1.0
C4A A:CLA803 3.0 80.1 1.0
C4B A:CLA803 3.0 80.1 1.0
C1C A:CLA803 3.1 80.1 1.0
C4C A:CLA803 3.1 80.1 1.0
C1D A:CLA803 3.1 80.1 1.0
C1A A:CLA803 3.1 80.1 1.0
CHB A:CLA803 3.4 80.1 1.0
CHC A:CLA803 3.4 80.1 1.0
CHA A:CLA803 3.4 80.1 1.0
CHD A:CLA803 3.5 80.1 1.0
CBB B:CLA802 3.5 80.1 1.0
CAB B:CLA802 3.9 80.1 1.0
OD1 A:ASN600 4.1 59.2 1.0
C3D A:CLA803 4.2 80.1 1.0
C3B A:CLA803 4.3 80.1 1.0
C2B A:CLA803 4.3 80.1 1.0
C3C A:CLA803 4.3 80.1 1.0
C2C A:CLA803 4.3 80.1 1.0
C2D A:CLA803 4.3 80.1 1.0
C3A A:CLA803 4.4 80.1 1.0
C19 A:CL0801 4.4 60.9 1.0
C2A A:CLA803 4.4 80.1 1.0
CB B:ALA665 4.6 54.8 1.0
C2 A:CL0801 4.8 60.9 1.0
C3 A:CL0801 4.8 60.9 1.0
C5 A:CL0801 4.8 60.9 1.0
C3B B:CLA802 4.8 80.1 1.0
CBD A:CLA803 4.9 80.1 1.0
CG A:ASN600 4.9 59.2 1.0

Magnesium binding site 4 out of 288 in 6vpv

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Magnesium binding site 4 out of 288 in the Trimeric Photosystem I From the High-Light Tolerant Cyanobacteria Cyanobacterium Aponinum


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Trimeric Photosystem I From the High-Light Tolerant Cyanobacteria Cyanobacterium Aponinum within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg804

b:85.3
occ:1.00
MG A:CLA804 0.0 85.3 1.0
NB A:CLA804 2.0 85.3 1.0
ND A:CLA804 2.0 85.3 1.0
NA A:CLA804 2.1 85.3 1.0
NC A:CLA804 2.1 85.3 1.0
C4D A:CLA804 2.9 85.3 1.0
C1B A:CLA804 3.0 85.3 1.0
C4A A:CLA804 3.0 85.3 1.0
C4B A:CLA804 3.1 85.3 1.0
C1C A:CLA804 3.1 85.3 1.0
C4C A:CLA804 3.1 85.3 1.0
C1A A:CLA804 3.1 85.3 1.0
C1D A:CLA804 3.1 85.3 1.0
CE1 A:HIS56 3.2 79.2 1.0
CHB A:CLA804 3.4 85.3 1.0
CHC A:CLA804 3.4 85.3 1.0
CHA A:CLA804 3.5 85.3 1.0
CHD A:CLA804 3.5 85.3 1.0
C7 A:CLA811 3.5 88.9 1.0
NE2 A:HIS56 3.9 79.2 1.0
C5 A:CLA811 4.1 88.9 1.0
C8 A:CLA811 4.2 88.9 1.0
C3D A:CLA804 4.2 85.3 1.0
C10 A:CLA811 4.3 88.9 1.0
C2B A:CLA804 4.3 85.3 1.0
C9 A:CLA811 4.3 88.9 1.0
ND1 A:HIS56 4.3 79.2 1.0
C3B A:CLA804 4.3 85.3 1.0
C2C A:CLA804 4.3 85.3 1.0
C2D A:CLA804 4.3 85.3 1.0
C3C A:CLA804 4.4 85.3 1.0
C3A A:CLA804 4.4 85.3 1.0
C6 A:CLA811 4.4 88.9 1.0
C2A A:CLA804 4.4 85.3 1.0
CBD A:CLA804 4.9 85.3 1.0

Magnesium binding site 5 out of 288 in 6vpv

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Magnesium binding site 5 out of 288 in the Trimeric Photosystem I From the High-Light Tolerant Cyanobacteria Cyanobacterium Aponinum


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Trimeric Photosystem I From the High-Light Tolerant Cyanobacteria Cyanobacterium Aponinum within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg805

b:73.8
occ:1.00
MG A:CLA805 0.0 73.8 1.0
NB A:CLA805 2.0 73.8 1.0
ND A:CLA805 2.0 73.8 1.0
NC A:CLA805 2.1 73.8 1.0
NA A:CLA805 2.1 73.8 1.0
C4D A:CLA805 2.9 73.8 1.0
C1B A:CLA805 3.0 73.8 1.0
NE2 A:HIS76 3.0 77.2 1.0
C4A A:CLA805 3.0 73.8 1.0
C4B A:CLA805 3.0 73.8 1.0
C1C A:CLA805 3.0 73.8 1.0
C4C A:CLA805 3.1 73.8 1.0
C1A A:CLA805 3.1 73.8 1.0
C1D A:CLA805 3.1 73.8 1.0
CHB A:CLA805 3.4 73.8 1.0
CMB A:CLA830 3.4 80.1 1.0
CHC A:CLA805 3.4 73.8 1.0
CHA A:CLA805 3.5 73.8 1.0
CHD A:CLA805 3.5 73.8 1.0
CD2 A:HIS76 3.6 77.2 1.0
CE1 A:HIS76 4.2 77.2 1.0
C2C A:CLA805 4.2 73.8 1.0
C3D A:CLA805 4.2 73.8 1.0
C3C A:CLA805 4.3 73.8 1.0
C2B A:CLA805 4.3 73.8 1.0
C3B A:CLA805 4.3 73.8 1.0
C2D A:CLA805 4.3 73.8 1.0
C3A A:CLA805 4.4 73.8 1.0
C2B A:CLA830 4.4 80.1 1.0
C2A A:CLA805 4.4 73.8 1.0
CBB A:CLA830 4.6 80.1 1.0
CG2 A:ILE72 4.8 80.3 1.0
CG A:HIS76 4.8 77.2 1.0
CBD A:CLA805 4.9 73.8 1.0

Magnesium binding site 6 out of 288 in 6vpv

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Magnesium binding site 6 out of 288 in the Trimeric Photosystem I From the High-Light Tolerant Cyanobacteria Cyanobacterium Aponinum


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Trimeric Photosystem I From the High-Light Tolerant Cyanobacteria Cyanobacterium Aponinum within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg806

b:80.1
occ:1.00
MG A:CLA806 0.0 80.1 1.0
NB A:CLA806 2.0 80.1 1.0
ND A:CLA806 2.0 80.1 1.0
NC A:CLA806 2.1 80.1 1.0
NA A:CLA806 2.1 80.1 1.0
C4D A:CLA806 2.9 80.1 1.0
C1B A:CLA806 3.0 80.1 1.0
C4A A:CLA806 3.0 80.1 1.0
C4B A:CLA806 3.1 80.1 1.0
C1C A:CLA806 3.1 80.1 1.0
NE2 A:HIS79 3.1 75.8 1.0
C4C A:CLA806 3.1 80.1 1.0
C1D A:CLA806 3.1 80.1 1.0
C1A A:CLA806 3.1 80.1 1.0
CHB A:CLA806 3.4 80.1 1.0
CHC A:CLA806 3.4 80.1 1.0
CHA A:CLA806 3.5 80.1 1.0
CHD A:CLA806 3.5 80.1 1.0
C17 A:CLA806 3.6 80.1 1.0
CD2 A:HIS79 3.7 75.8 1.0
C15 A:CLA806 4.0 80.1 1.0
C3D A:CLA806 4.2 80.1 1.0
CE1 A:HIS79 4.3 75.8 1.0
C2B A:CLA806 4.3 80.1 1.0
C3B A:CLA806 4.3 80.1 1.0
C2C A:CLA806 4.3 80.1 1.0
C16 A:CLA806 4.3 80.1 1.0
C3C A:CLA806 4.3 80.1 1.0
C2D A:CLA806 4.3 80.1 1.0
C3A A:CLA806 4.4 80.1 1.0
C2A A:CLA806 4.4 80.1 1.0
C18 A:CLA806 4.8 80.1 1.0
CBD A:CLA806 4.9 80.1 1.0
CG A:HIS79 5.0 75.8 1.0
CMA A:CLA806 5.0 80.1 1.0

Magnesium binding site 7 out of 288 in 6vpv

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Magnesium binding site 7 out of 288 in the Trimeric Photosystem I From the High-Light Tolerant Cyanobacteria Cyanobacterium Aponinum


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Trimeric Photosystem I From the High-Light Tolerant Cyanobacteria Cyanobacterium Aponinum within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg807

b:88.5
occ:1.00
MG A:CLA807 0.0 88.5 1.0
NB A:CLA807 2.0 88.5 1.0
ND A:CLA807 2.0 88.5 1.0
NC A:CLA807 2.1 88.5 1.0
NA A:CLA807 2.1 88.5 1.0
C4D A:CLA807 2.9 88.5 1.0
C1B A:CLA807 3.0 88.5 1.0
C4B A:CLA807 3.0 88.5 1.0
C4A A:CLA807 3.1 88.5 1.0
C1C A:CLA807 3.1 88.5 1.0
C1A A:CLA807 3.1 88.5 1.0
C4C A:CLA807 3.1 88.5 1.0
C1D A:CLA807 3.1 88.5 1.0
CE1 A:HIS93 3.2 85.9 1.0
CHB A:CLA807 3.4 88.5 1.0
CHC A:CLA807 3.4 88.5 1.0
CHA A:CLA807 3.5 88.5 1.0
CHD A:CLA807 3.5 88.5 1.0
NE2 A:HIS93 3.6 85.9 1.0
C3D A:CLA807 4.2 88.5 1.0
C2B A:CLA807 4.3 88.5 1.0
C3B A:CLA807 4.3 88.5 1.0
C2C A:CLA807 4.3 88.5 1.0
C2D A:CLA807 4.3 88.5 1.0
C3C A:CLA807 4.4 88.5 1.0
ND1 A:HIS93 4.4 85.9 1.0
C3A A:CLA807 4.4 88.5 1.0
C2A A:CLA807 4.4 88.5 1.0
CBA A:CLA807 4.8 88.5 1.0
CD2 A:HIS93 4.9 85.9 1.0
CBD A:CLA807 4.9 88.5 1.0

Magnesium binding site 8 out of 288 in 6vpv

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Magnesium binding site 8 out of 288 in the Trimeric Photosystem I From the High-Light Tolerant Cyanobacteria Cyanobacterium Aponinum


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of Trimeric Photosystem I From the High-Light Tolerant Cyanobacteria Cyanobacterium Aponinum within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg808

b:80.1
occ:1.00
MG A:CLA808 0.0 80.1 1.0
NB A:CLA808 2.0 80.1 1.0
ND A:CLA808 2.0 80.1 1.0
NA A:CLA808 2.1 80.1 1.0
NC A:CLA808 2.1 80.1 1.0
C4D A:CLA808 2.9 80.1 1.0
C1B A:CLA808 3.0 80.1 1.0
C4A A:CLA808 3.0 80.1 1.0
C4B A:CLA808 3.0 80.1 1.0
C1C A:CLA808 3.1 80.1 1.0
OE1 A:GLN115 3.1 85.2 1.0
C1A A:CLA808 3.1 80.1 1.0
C4C A:CLA808 3.1 80.1 1.0
C1D A:CLA808 3.1 80.1 1.0
CHB A:CLA808 3.4 80.1 1.0
CHC A:CLA808 3.4 80.1 1.0
CHA A:CLA808 3.5 80.1 1.0
NE2 A:GLN115 3.5 85.2 1.0
CHD A:CLA808 3.5 80.1 1.0
CD A:GLN115 3.6 85.2 1.0
C2 A:CLA828 3.9 80.1 1.0
C3 A:CLA828 4.1 80.1 1.0
C3D A:CLA808 4.2 80.1 1.0
C2B A:CLA808 4.3 80.1 1.0
C3B A:CLA808 4.3 80.1 1.0
C2C A:CLA808 4.3 80.1 1.0
C3C A:CLA808 4.3 80.1 1.0
C2D A:CLA808 4.3 80.1 1.0
C5 A:CLA828 4.4 80.1 1.0
C3A A:CLA808 4.4 80.1 1.0
C2A A:CLA808 4.4 80.1 1.0
O2A A:CLA828 4.4 80.1 1.0
C1 A:CLA828 4.4 80.1 1.0
C4 A:CLA828 4.6 80.1 1.0
CBD A:CLA808 4.9 80.1 1.0
CBA A:CLA808 4.9 80.1 1.0

Magnesium binding site 9 out of 288 in 6vpv

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Magnesium binding site 9 out of 288 in the Trimeric Photosystem I From the High-Light Tolerant Cyanobacteria Cyanobacterium Aponinum


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 9 of Trimeric Photosystem I From the High-Light Tolerant Cyanobacteria Cyanobacterium Aponinum within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg809

b:86.4
occ:1.00
MG A:CLA809 0.0 86.4 1.0
NB A:CLA809 2.0 86.4 1.0
ND A:CLA809 2.0 86.4 1.0
NC A:CLA809 2.1 86.4 1.0
NA A:CLA809 2.1 86.4 1.0
C4D A:CLA809 2.9 86.4 1.0
C1B A:CLA809 3.0 86.4 1.0
OE1 A:GLN123 3.0 90.3 1.0
C4A A:CLA809 3.0 86.4 1.0
C4B A:CLA809 3.1 86.4 1.0
C1C A:CLA809 3.1 86.4 1.0
C1D A:CLA809 3.1 86.4 1.0
C4C A:CLA809 3.1 86.4 1.0
C1A A:CLA809 3.2 86.4 1.0
CHB A:CLA809 3.4 86.4 1.0
CHC A:CLA809 3.4 86.4 1.0
CHA A:CLA809 3.5 86.4 1.0
CHD A:CLA809 3.5 86.4 1.0
C13 A:CLA828 3.8 80.1 1.0
C12 A:CLA828 4.0 80.1 1.0
CD A:GLN123 4.0 90.3 1.0
C3D A:CLA809 4.2 86.4 1.0
C2B A:CLA809 4.3 86.4 1.0
C3B A:CLA809 4.3 86.4 1.0
C2C A:CLA809 4.3 86.4 1.0
C2D A:CLA809 4.3 86.4 1.0
C3C A:CLA809 4.4 86.4 1.0
NE2 A:GLN123 4.4 90.3 1.0
C3A A:CLA809 4.4 86.4 1.0
C2A A:CLA809 4.5 86.4 1.0
CBB A:CLA808 4.6 80.1 1.0
C15 A:CLA828 4.6 80.1 1.0
C14 A:CLA828 4.7 80.1 1.0
CBD A:CLA809 4.9 86.4 1.0

Magnesium binding site 10 out of 288 in 6vpv

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Magnesium binding site 10 out of 288 in the Trimeric Photosystem I From the High-Light Tolerant Cyanobacteria Cyanobacterium Aponinum


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 10 of Trimeric Photosystem I From the High-Light Tolerant Cyanobacteria Cyanobacterium Aponinum within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg810

b:86.3
occ:1.00
MG A:CLA810 0.0 86.3 1.0
NB A:CLA810 2.0 86.3 1.0
ND A:CLA810 2.0 86.3 1.0
NC A:CLA810 2.1 86.3 1.0
NA A:CLA810 2.1 86.3 1.0
C4D A:CLA810 2.9 86.3 1.0
C1B A:CLA810 3.0 86.3 1.0
C4A A:CLA810 3.0 86.3 1.0
C4B A:CLA810 3.1 86.3 1.0
C1C A:CLA810 3.1 86.3 1.0
NE2 A:HIS179 3.1 87.5 1.0
C4C A:CLA810 3.1 86.3 1.0
C1A A:CLA810 3.1 86.3 1.0
C1D A:CLA810 3.1 86.3 1.0
CHB A:CLA810 3.4 86.3 1.0
CHC A:CLA810 3.4 86.3 1.0
CE1 A:HIS179 3.4 87.5 1.0
CHA A:CLA810 3.5 86.3 1.0
CHD A:CLA810 3.5 86.3 1.0
C3D A:CLA810 4.2 86.3 1.0
C2B A:CLA810 4.3 86.3 1.0
C3B A:CLA810 4.3 86.3 1.0
C2C A:CLA810 4.3 86.3 1.0
C3C A:CLA810 4.3 86.3 1.0
C2D A:CLA810 4.3 86.3 1.0
CD2 A:HIS179 4.4 87.5 1.0
C3A A:CLA810 4.4 86.3 1.0
C2A A:CLA810 4.4 86.3 1.0
ND1 A:HIS179 4.7 87.5 1.0
CBD A:CLA810 4.9 86.3 1.0

Reference:

Z.Dobson, H.Toporik, N.Vaughn, S.Lin, D.Williams, P.Fromme, Y.Mazor. Trimeric Photosystem I From the High-Light Tolerant Cyanobacteria Cyanobacterium Aponinum To Be Published.
Page generated: Tue Oct 1 22:13:10 2024

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