Magnesium in PDB 6vs4: Crystal Structure of Adp Ribosylation Factor-Like Gtp Binding Protein /Small Copii Coat Gtpase SAR1 From Encephalitozoon Cuniculi in Complex with Gdp

The structure of Crystal Structure of Adp Ribosylation Factor-Like Gtp Binding Protein /Small Copii Coat Gtpase SAR1 From Encephalitozoon Cuniculi in Complex with Gdp, PDB code: 6vs4 was solved by Seattle Structural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	45.59 / 2.40
Space group	P 43 21 2
Cell size a, b, c (Å), α, β, γ (°)	65.190, 65.190, 307.710, 90.00, 90.00, 90.00
R / Rfree (%)	18 / 23.5

The binding sites of Magnesium atom in the Crystal Structure of Adp Ribosylation Factor-Like Gtp Binding Protein /Small Copii Coat Gtpase SAR1 From Encephalitozoon Cuniculi in Complex with Gdp (pdb code 6vs4). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of Adp Ribosylation Factor-Like Gtp Binding Protein /Small Copii Coat Gtpase SAR1 From Encephalitozoon Cuniculi in Complex with Gdp, PDB code: 6vs4:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Crystal Structure of Adp Ribosylation Factor-Like Gtp Binding Protein /Small Copii Coat Gtpase SAR1 From Encephalitozoon Cuniculi in Complex with Gdp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Adp Ribosylation Factor-Like Gtp Binding Protein /Small Copii Coat Gtpase SAR1 From Encephalitozoon Cuniculi in Complex with Gdp within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg303 b:57.7 occ:1.00 O A:HOH410 2.0 55.3 1.0 O A:HOH404 2.0 51.3 1.0 OG1 A:THR49 2.1 73.5 1.0 O2B A:GDP302 2.3 66.0 1.0 CB A:THR49 3.3 59.1 1.0 PB A:GDP302 3.6 59.2 1.0 O A:HOH434 3.6 54.4 1.0 O1B A:GDP302 3.8 64.4 1.0 OD2 A:ASP85 3.8 67.1 1.0 OD1 A:ASP85 4.0 57.3 1.0 N A:THR49 4.2 55.1 1.0 CG2 A:THR49 4.3 53.1 1.0 CG A:ASP85 4.3 63.0 1.0 CA A:THR49 4.3 57.2 1.0 O3B A:GDP302 4.6 48.8 1.0 O3A A:GDP302 4.6 41.8 1.0 NZ A:LYS48 4.7 61.0 1.0 O1A A:GDP302 4.8 63.8 1.0

Magnesium binding site 2 out of 2 in the Crystal Structure of Adp Ribosylation Factor-Like Gtp Binding Protein /Small Copii Coat Gtpase SAR1 From Encephalitozoon Cuniculi in Complex with Gdp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of Adp Ribosylation Factor-Like Gtp Binding Protein /Small Copii Coat Gtpase SAR1 From Encephalitozoon Cuniculi in Complex with Gdp within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg304 b:53.9 occ:1.00 O B:HOH412 2.0 54.7 1.0 O B:HOH421 2.0 52.2 1.0 OG1 B:THR49 2.1 61.1 1.0 O2B B:GDP303 2.2 46.7 1.0 O B:HOH418 2.2 51.8 1.0 O B:HOH401 2.3 43.8 1.0 CB B:THR49 3.1 51.5 1.0 PB B:GDP303 3.3 47.9 1.0 O1B B:GDP303 3.4 50.6 1.0 OD2 B:ASP85 4.0 62.0 1.0 O1A B:GDP303 4.0 47.7 1.0 O B:HOH414 4.1 64.7 1.0 CG2 B:THR49 4.1 49.0 1.0 N B:THR49 4.1 44.7 1.0 CA B:THR49 4.2 46.7 1.0 OD1 B:ASP85 4.2 58.9 1.0 O B:HOH408 4.3 46.9 1.0 O3A B:GDP303 4.3 49.9 1.0 O B:HOH434 4.4 50.0 1.0 O3B B:GDP303 4.5 40.5 1.0 CG B:ASP85 4.5 59.3 1.0 PA B:GDP303 4.6 52.9 1.0 O2A B:GDP303 4.8 57.4 1.0 NZ B:LYS48 4.9 58.5 1.0

J.Abendroth, D.Fox Iii, D.D.Lorimer, P.S.Horanyi, T.E.Edwards. Crystal Structure of Adp Ribosylation Factor-Like Gtp Binding Protein /Small Copii Coat Gtpase SAR1 From Encephalitozoon Cuniculi in Complex with Gdp To Be Published.