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Magnesium in PDB 6vz8: Arabidopsis Thaliana Acetohydroxyacid Synthase Complex with Valine Bound

Enzymatic activity of Arabidopsis Thaliana Acetohydroxyacid Synthase Complex with Valine Bound

All present enzymatic activity of Arabidopsis Thaliana Acetohydroxyacid Synthase Complex with Valine Bound:
2.2.1.6;

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Arabidopsis Thaliana Acetohydroxyacid Synthase Complex with Valine Bound (pdb code 6vz8). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 8 binding sites of Magnesium where determined in the Arabidopsis Thaliana Acetohydroxyacid Synthase Complex with Valine Bound, PDB code: 6vz8:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Magnesium binding site 1 out of 8 in 6vz8

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Magnesium binding site 1 out of 8 in the Arabidopsis Thaliana Acetohydroxyacid Synthase Complex with Valine Bound


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Arabidopsis Thaliana Acetohydroxyacid Synthase Complex with Valine Bound within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg701

b:0.4
occ:1.00
O2A D:TPP703 1.9 0.2 1.0
O2B D:TPP703 2.0 0.2 1.0
O7 D:TPP703 2.2 0.2 1.0
PA D:TPP703 2.2 0.2 1.0
PB D:TPP703 2.4 0.2 1.0
N D:GLY569 2.5 0.4 1.0
O3A D:TPP703 2.7 0.2 1.0
O D:HIS567 2.7 0.1 1.0
O3B D:TPP703 2.7 0.2 1.0
CA D:GLY569 3.0 0.4 1.0
C7 D:TPP703 3.5 0.2 1.0
C D:LEU568 3.6 0.3 1.0
O1A D:TPP703 3.7 0.2 1.0
C D:HIS567 3.8 0.1 1.0
CA D:LEU568 3.8 0.3 1.0
O1B D:TPP703 3.8 0.2 1.0
ND2 D:ASN565 4.1 0.7 1.0
C D:GLY569 4.2 0.4 1.0
N D:ASP538 4.2 0.4 1.0
N D:LEU568 4.2 0.3 1.0
N D:MET570 4.3 0.2 1.0
C6 D:TPP703 4.4 0.2 1.0
N D:GLY539 4.5 0.9 1.0
CB D:ASP538 4.6 0.4 1.0
O D:LEU568 4.7 0.3 1.0
OD1 D:ASN565 4.7 0.7 1.0
CA D:GLY537 4.8 0.1 1.0
CG D:ASN565 4.8 0.7 1.0
CA D:ASP538 4.9 0.4 1.0
CA D:HIS567 5.0 0.1 1.0
C D:GLY537 5.0 0.1 1.0

Magnesium binding site 2 out of 8 in 6vz8

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Magnesium binding site 2 out of 8 in the Arabidopsis Thaliana Acetohydroxyacid Synthase Complex with Valine Bound


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Arabidopsis Thaliana Acetohydroxyacid Synthase Complex with Valine Bound within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Mg701

b:0.8
occ:1.00
O1A E:TPP703 1.9 0.5 1.0
O1B E:TPP703 1.9 0.5 1.0
O3A E:TPP703 2.2 0.5 1.0
PA E:TPP703 2.3 0.5 1.0
PB E:TPP703 2.4 0.5 1.0
O7 E:TPP703 3.0 0.5 1.0
O E:HIS567 3.2 0.3 1.0
CA E:GLY537 3.3 0.7 1.0
N E:ASP538 3.4 1.0 1.0
O2B E:TPP703 3.4 0.5 1.0
C E:GLY537 3.6 0.7 1.0
O3B E:TPP703 3.7 0.5 1.0
O2A E:TPP703 3.7 0.5 1.0
ND2 E:ASN565 3.9 0.5 1.0
N E:GLY569 3.9 0.1 1.0
N E:GLY539 4.1 0.9 1.0
OD1 E:ASN565 4.1 0.5 1.0
C7 E:TPP703 4.3 0.5 1.0
C E:HIS567 4.4 0.3 1.0
CG E:ASN565 4.4 0.5 1.0
ND1 E:HIS488 4.5 0.9 1.0
CA E:ASP538 4.5 1.0 1.0
O E:GLY537 4.6 0.7 1.0
N E:GLY537 4.6 0.7 1.0
CA E:LEU568 4.6 0.4 1.0
CA E:GLY569 4.7 0.1 1.0
OD1 E:ASP538 4.7 1.0 1.0
CG E:ASP538 4.7 1.0 1.0
C E:LEU568 4.8 0.4 1.0
CE1 E:HIS488 4.8 0.9 1.0
C E:ASP538 4.8 1.0 1.0
CA E:GLY539 4.8 0.9 1.0
N E:LEU568 5.0 0.4 1.0
O E:LEU563 5.0 0.9 1.0
OD2 E:ASP538 5.0 1.0 1.0

Magnesium binding site 3 out of 8 in 6vz8

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Magnesium binding site 3 out of 8 in the Arabidopsis Thaliana Acetohydroxyacid Synthase Complex with Valine Bound


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Arabidopsis Thaliana Acetohydroxyacid Synthase Complex with Valine Bound within 5.0Å range:
probe atom residue distance (Å) B Occ
H:Mg701

b:0.4
occ:1.00
O2A H:TPP703 1.9 0.2 1.0
O2B H:TPP703 2.0 0.2 1.0
O7 H:TPP703 2.2 0.2 1.0
PA H:TPP703 2.2 0.2 1.0
PB H:TPP703 2.4 0.2 1.0
N H:GLY569 2.5 0.4 1.0
O3A H:TPP703 2.7 0.2 1.0
O H:HIS567 2.7 0.1 1.0
O3B H:TPP703 2.7 0.2 1.0
CA H:GLY569 3.0 0.4 1.0
C7 H:TPP703 3.5 0.2 1.0
C H:LEU568 3.6 0.3 1.0
O1A H:TPP703 3.7 0.2 1.0
C H:HIS567 3.8 0.1 1.0
CA H:LEU568 3.8 0.3 1.0
O1B H:TPP703 3.8 0.2 1.0
ND2 H:ASN565 4.1 0.7 1.0
C H:GLY569 4.2 0.4 1.0
N H:ASP538 4.2 0.4 1.0
N H:LEU568 4.2 0.3 1.0
N H:MET570 4.3 0.2 1.0
C6 H:TPP703 4.4 0.2 1.0
N H:GLY539 4.5 0.9 1.0
CB H:ASP538 4.6 0.4 1.0
O H:LEU568 4.7 0.3 1.0
OD1 H:ASN565 4.7 0.7 1.0
CA H:GLY537 4.8 0.1 1.0
CG H:ASN565 4.8 0.7 1.0
CA H:ASP538 4.9 0.4 1.0
CA H:HIS567 5.0 0.1 1.0
C H:GLY537 5.0 0.1 1.0

Magnesium binding site 4 out of 8 in 6vz8

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Magnesium binding site 4 out of 8 in the Arabidopsis Thaliana Acetohydroxyacid Synthase Complex with Valine Bound


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Arabidopsis Thaliana Acetohydroxyacid Synthase Complex with Valine Bound within 5.0Å range:
probe atom residue distance (Å) B Occ
I:Mg701

b:0.8
occ:1.00
O1A I:TPP703 1.9 0.5 1.0
O1B I:TPP703 1.9 0.5 1.0
O3A I:TPP703 2.2 0.5 1.0
PA I:TPP703 2.3 0.5 1.0
PB I:TPP703 2.4 0.5 1.0
O7 I:TPP703 3.0 0.5 1.0
O I:HIS567 3.2 0.3 1.0
CA I:GLY537 3.3 0.7 1.0
N I:ASP538 3.4 1.0 1.0
O2B I:TPP703 3.4 0.5 1.0
C I:GLY537 3.6 0.7 1.0
O3B I:TPP703 3.7 0.5 1.0
O2A I:TPP703 3.7 0.5 1.0
ND2 I:ASN565 3.9 0.5 1.0
N I:GLY569 3.9 0.1 1.0
N I:GLY539 4.1 0.9 1.0
OD1 I:ASN565 4.1 0.5 1.0
C7 I:TPP703 4.3 0.5 1.0
C I:HIS567 4.4 0.3 1.0
CG I:ASN565 4.4 0.5 1.0
ND1 I:HIS488 4.5 0.9 1.0
CA I:ASP538 4.5 1.0 1.0
O I:GLY537 4.6 0.7 1.0
N I:GLY537 4.6 0.7 1.0
CA I:LEU568 4.6 0.4 1.0
CA I:GLY569 4.7 0.1 1.0
OD1 I:ASP538 4.7 1.0 1.0
CG I:ASP538 4.7 1.0 1.0
C I:LEU568 4.8 0.4 1.0
CE1 I:HIS488 4.8 0.9 1.0
C I:ASP538 4.8 1.0 1.0
CA I:GLY539 4.8 0.9 1.0
N I:LEU568 5.0 0.4 1.0
O I:LEU563 5.0 0.9 1.0
OD2 I:ASP538 5.0 1.0 1.0

Magnesium binding site 5 out of 8 in 6vz8

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Magnesium binding site 5 out of 8 in the Arabidopsis Thaliana Acetohydroxyacid Synthase Complex with Valine Bound


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Arabidopsis Thaliana Acetohydroxyacid Synthase Complex with Valine Bound within 5.0Å range:
probe atom residue distance (Å) B Occ
L:Mg701

b:0.4
occ:1.00
O2A L:TPP703 1.9 0.2 1.0
O2B L:TPP703 2.0 0.2 1.0
O7 L:TPP703 2.2 0.2 1.0
PA L:TPP703 2.2 0.2 1.0
PB L:TPP703 2.4 0.2 1.0
N L:GLY569 2.5 0.4 1.0
O3A L:TPP703 2.7 0.2 1.0
O L:HIS567 2.7 0.1 1.0
O3B L:TPP703 2.7 0.2 1.0
CA L:GLY569 3.0 0.4 1.0
C7 L:TPP703 3.5 0.2 1.0
C L:LEU568 3.6 0.3 1.0
O1A L:TPP703 3.7 0.2 1.0
C L:HIS567 3.8 0.1 1.0
CA L:LEU568 3.8 0.3 1.0
O1B L:TPP703 3.8 0.2 1.0
ND2 L:ASN565 4.1 0.7 1.0
C L:GLY569 4.2 0.4 1.0
N L:ASP538 4.2 0.4 1.0
N L:LEU568 4.2 0.3 1.0
N L:MET570 4.3 0.2 1.0
C6 L:TPP703 4.4 0.2 1.0
N L:GLY539 4.5 0.9 1.0
CB L:ASP538 4.6 0.4 1.0
O L:LEU568 4.7 0.3 1.0
OD1 L:ASN565 4.7 0.7 1.0
CA L:GLY537 4.8 0.1 1.0
CG L:ASN565 4.8 0.7 1.0
CA L:ASP538 4.9 0.4 1.0
CA L:HIS567 5.0 0.1 1.0
C L:GLY537 5.0 0.1 1.0

Magnesium binding site 6 out of 8 in 6vz8

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Magnesium binding site 6 out of 8 in the Arabidopsis Thaliana Acetohydroxyacid Synthase Complex with Valine Bound


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Arabidopsis Thaliana Acetohydroxyacid Synthase Complex with Valine Bound within 5.0Å range:
probe atom residue distance (Å) B Occ
M:Mg701

b:0.8
occ:1.00
O1A M:TPP703 1.9 0.5 1.0
O1B M:TPP703 1.9 0.5 1.0
O3A M:TPP703 2.2 0.5 1.0
PA M:TPP703 2.3 0.5 1.0
PB M:TPP703 2.4 0.5 1.0
O7 M:TPP703 3.0 0.5 1.0
O M:HIS567 3.2 0.3 1.0
CA M:GLY537 3.3 0.7 1.0
N M:ASP538 3.4 1.0 1.0
O2B M:TPP703 3.4 0.5 1.0
C M:GLY537 3.6 0.7 1.0
O3B M:TPP703 3.7 0.5 1.0
O2A M:TPP703 3.7 0.5 1.0
ND2 M:ASN565 3.9 0.5 1.0
N M:GLY569 3.9 0.1 1.0
N M:GLY539 4.1 0.9 1.0
OD1 M:ASN565 4.1 0.5 1.0
C7 M:TPP703 4.3 0.5 1.0
C M:HIS567 4.4 0.3 1.0
CG M:ASN565 4.4 0.5 1.0
ND1 M:HIS488 4.5 0.9 1.0
CA M:ASP538 4.5 1.0 1.0
O M:GLY537 4.6 0.7 1.0
N M:GLY537 4.6 0.7 1.0
CA M:LEU568 4.6 0.4 1.0
CA M:GLY569 4.7 0.1 1.0
OD1 M:ASP538 4.7 1.0 1.0
CG M:ASP538 4.7 1.0 1.0
C M:LEU568 4.8 0.4 1.0
CE1 M:HIS488 4.8 0.9 1.0
C M:ASP538 4.8 1.0 1.0
CA M:GLY539 4.8 0.9 1.0
N M:LEU568 5.0 0.4 1.0
O M:LEU563 5.0 0.9 1.0
OD2 M:ASP538 5.0 1.0 1.0

Magnesium binding site 7 out of 8 in 6vz8

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Magnesium binding site 7 out of 8 in the Arabidopsis Thaliana Acetohydroxyacid Synthase Complex with Valine Bound


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Arabidopsis Thaliana Acetohydroxyacid Synthase Complex with Valine Bound within 5.0Å range:
probe atom residue distance (Å) B Occ
P:Mg701

b:0.4
occ:1.00
O2A P:TPP703 1.9 0.2 1.0
O2B P:TPP703 2.0 0.2 1.0
O7 P:TPP703 2.2 0.2 1.0
PA P:TPP703 2.2 0.2 1.0
PB P:TPP703 2.4 0.2 1.0
N P:GLY569 2.5 0.4 1.0
O3A P:TPP703 2.7 0.2 1.0
O P:HIS567 2.7 0.1 1.0
O3B P:TPP703 2.7 0.2 1.0
CA P:GLY569 3.0 0.4 1.0
C7 P:TPP703 3.5 0.2 1.0
C P:LEU568 3.6 0.3 1.0
O1A P:TPP703 3.7 0.2 1.0
C P:HIS567 3.8 0.1 1.0
CA P:LEU568 3.8 0.3 1.0
O1B P:TPP703 3.8 0.2 1.0
ND2 P:ASN565 4.1 0.7 1.0
C P:GLY569 4.2 0.4 1.0
N P:ASP538 4.2 0.4 1.0
N P:LEU568 4.2 0.3 1.0
N P:MET570 4.3 0.2 1.0
C6 P:TPP703 4.4 0.2 1.0
N P:GLY539 4.5 0.9 1.0
CB P:ASP538 4.6 0.4 1.0
O P:LEU568 4.7 0.3 1.0
OD1 P:ASN565 4.7 0.7 1.0
CA P:GLY537 4.8 0.1 1.0
CG P:ASN565 4.8 0.7 1.0
CA P:ASP538 4.9 0.4 1.0
CA P:HIS567 5.0 0.1 1.0
C P:GLY537 5.0 0.1 1.0

Magnesium binding site 8 out of 8 in 6vz8

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Magnesium binding site 8 out of 8 in the Arabidopsis Thaliana Acetohydroxyacid Synthase Complex with Valine Bound


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of Arabidopsis Thaliana Acetohydroxyacid Synthase Complex with Valine Bound within 5.0Å range:
probe atom residue distance (Å) B Occ
Q:Mg701

b:0.8
occ:1.00
O1A Q:TPP703 1.9 0.5 1.0
O1B Q:TPP703 1.9 0.5 1.0
O3A Q:TPP703 2.2 0.5 1.0
PA Q:TPP703 2.3 0.5 1.0
PB Q:TPP703 2.4 0.5 1.0
O7 Q:TPP703 3.0 0.5 1.0
O Q:HIS567 3.2 0.3 1.0
CA Q:GLY537 3.3 0.7 1.0
N Q:ASP538 3.4 1.0 1.0
O2B Q:TPP703 3.4 0.5 1.0
C Q:GLY537 3.6 0.7 1.0
O3B Q:TPP703 3.7 0.5 1.0
O2A Q:TPP703 3.7 0.5 1.0
ND2 Q:ASN565 3.9 0.5 1.0
N Q:GLY569 3.9 0.1 1.0
N Q:GLY539 4.1 0.9 1.0
OD1 Q:ASN565 4.1 0.5 1.0
C7 Q:TPP703 4.3 0.5 1.0
C Q:HIS567 4.4 0.3 1.0
CG Q:ASN565 4.4 0.5 1.0
ND1 Q:HIS488 4.5 0.9 1.0
CA Q:ASP538 4.5 1.0 1.0
O Q:GLY537 4.6 0.7 1.0
N Q:GLY537 4.6 0.7 1.0
CA Q:LEU568 4.6 0.4 1.0
CA Q:GLY569 4.7 0.1 1.0
OD1 Q:ASP538 4.7 1.0 1.0
CG Q:ASP538 4.7 1.0 1.0
C Q:LEU568 4.8 0.4 1.0
CE1 Q:HIS488 4.8 0.9 1.0
C Q:ASP538 4.8 1.0 1.0
CA Q:GLY539 4.8 0.9 1.0
N Q:LEU568 5.0 0.4 1.0
O Q:LEU563 5.0 0.9 1.0
OD2 Q:ASP538 5.0 1.0 1.0

Reference:

L.W.Guddat, Y.S.Low. Fungal and Plant Acetohydroxyacid Synthases Form Complex Multi-Subunit Assemblies in the Shape of A Maltese Cross. To Be Published.
Page generated: Tue Oct 1 22:17:41 2024

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