Magnesium in PDB 6wcd: Crystal Structure of Xenopus Laevis APE2 Catalytic Domain

All present enzymatic activity of Crystal Structure of Xenopus Laevis APE2 Catalytic Domain:
4.2.99.18;

The structure of Crystal Structure of Xenopus Laevis APE2 Catalytic Domain, PDB code: 6wcd was solved by J.L.Wojtaszek, B.D.Wallace, R.S.Williams, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	37.17 / 1.54
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	56.383, 73.149, 98.877, 90.00, 90.00, 90.00
R / Rfree (%)	14.3 / 15.7

The binding sites of Magnesium atom in the Crystal Structure of Xenopus Laevis APE2 Catalytic Domain (pdb code 6wcd). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of Xenopus Laevis APE2 Catalytic Domain, PDB code: 6wcd:

Magnesium binding site 1 out of 1 in the Crystal Structure of Xenopus Laevis APE2 Catalytic Domain


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Xenopus Laevis APE2 Catalytic Domain within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg401 b:14.9 occ:1.00 OE1 A:GLU34 2.0 14.6 1.0 O A:HOH517 2.1 18.3 1.0 O A:HOH657 2.1 20.3 1.0 O A:HOH561 2.1 14.3 1.0 OD1 A:ASN9 2.1 15.3 1.0 O A:HOH515 2.1 18.8 1.0 CD A:GLU34 3.0 14.6 1.0 CG A:ASN9 3.1 14.2 1.0 HA A:ASN9 3.3 13.2 1.0 OE2 A:GLU34 3.3 17.2 1.0 HB2 A:ASN9 3.8 14.6 1.0 CB A:ASN9 3.9 12.2 1.0 OD1 A:ASP299 4.0 15.6 1.0 CA A:ASN9 4.1 11.0 1.0 HD21 A:ASN7 4.1 19.4 1.0 OD2 A:ASP299 4.1 19.9 1.0 O A:HOH565 4.1 44.8 1.0 HH A:TYR142 4.1 23.0 1.0 ND2 A:ASN9 4.1 18.9 1.0 O A:HOH589 4.1 19.9 1.0 HZ1 A:LYS36 4.2 35.7 1.0 HD21 A:ASN9 4.2 22.8 1.0 O A:HOH820 4.2 46.5 1.0 O A:HOH830 4.2 38.8 1.0 HE3 A:LYS36 4.3 25.5 1.0 OD1 A:ASN7 4.3 12.4 1.0 CG A:GLU34 4.4 13.0 1.0 HB3 A:GLU34 4.4 14.2 1.0 OH A:TYR142 4.5 19.2 1.0 CG A:ASP299 4.5 18.5 1.0 HE2 A:LYS36 4.6 25.5 1.0 O A:HOH804 4.7 38.8 1.0 CE A:LYS36 4.7 21.3 1.0 ND2 A:ASN7 4.8 16.2 1.0 HB2 A:GLU34 4.8 14.2 1.0 H A:ASN9 4.8 13.7 1.0 CB A:GLU34 4.8 11.8 1.0 O A:HOH729 4.8 39.1 1.0 HB3 A:ASN9 4.8 14.6 1.0 HG2 A:GLU34 4.8 15.6 1.0 NZ A:LYS36 4.9 29.8 1.0 HD2 A:HIS300 4.9 19.5 1.0 HD22 A:ASN9 4.9 22.8 1.0 HG3 A:GLU34 4.9 15.6 1.0 CG A:ASN7 4.9 13.0 1.0 N A:ASN9 5.0 11.4 1.0

A.Alvarez-Quilon, J.L.Wojtaszek, M.C.Mathieu, T.Patel, C.D.Appel, N.Hustedt, S.E.Rossi, B.D.Wallace, D.Setiaputra, S.Adam, Y.Ohashi, H.Melo, T.Cho, J.T.F.Young, J.Rouse, M.Zinda, R.S.Williams, D.Durocher. Endogenous Dna 3' Blocks Are Vulnerabilities For BRCA1 and BRCA2 Deficiency To Be Published.