Magnesium in PDB 6wfv: The Crystal Structure of A Collagen Galactosylhydroxylysyl Glucosyltransferase From Human

All present enzymatic activity of The Crystal Structure of A Collagen Galactosylhydroxylysyl Glucosyltransferase From Human:
1.14.11.4; 2.4.1.50; 2.4.1.66;

The structure of The Crystal Structure of A Collagen Galactosylhydroxylysyl Glucosyltransferase From Human, PDB code: 6wfv was solved by H.-F.Guo, C.-L.Tsai, M.D.Miller, G.N.Philips Jr., J.A.Tainer, J.M.Kurie, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	41.18 / 1.70
Space group	P 32 2 1
Cell size a, b, c (Å), α, β, γ (°)	71.066, 71.066, 110.813, 90, 90, 120
R / Rfree (%)	15.2 / 17.2

The structure of The Crystal Structure of A Collagen Galactosylhydroxylysyl Glucosyltransferase From Human also contains other interesting chemical elements:

Manganese

(Mn)

1 atom

The binding sites of Magnesium atom in the The Crystal Structure of A Collagen Galactosylhydroxylysyl Glucosyltransferase From Human (pdb code 6wfv). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the The Crystal Structure of A Collagen Galactosylhydroxylysyl Glucosyltransferase From Human, PDB code: 6wfv:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the The Crystal Structure of A Collagen Galactosylhydroxylysyl Glucosyltransferase From Human


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of The Crystal Structure of A Collagen Galactosylhydroxylysyl Glucosyltransferase From Human within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg302 b:30.4 occ:0.83 MN A:MN301 0.0 28.5 0.2 OD2 A:ASP112 2.1 24.3 1.0 O1A A:UDP304 2.3 33.5 1.0 NE2 A:HIS253 2.3 24.5 1.0 O1B A:UDP304 2.3 31.7 1.0 OD2 A:ASP115 2.4 26.5 1.0 OD1 A:ASP115 2.4 23.9 1.0 CG A:ASP115 2.8 26.7 1.0 CG A:ASP112 3.1 25.9 1.0 CE1 A:HIS253 3.2 32.6 1.0 CD2 A:HIS253 3.3 24.9 1.0 HB3 A:ASP112 3.3 23.2 1.0 HE1 A:HIS253 3.4 39.1 1.0 O A:HOH406 3.4 48.3 1.0 HD2 A:HIS253 3.4 29.9 1.0 HB2 A:ASP112 3.4 23.2 1.0 PA A:UDP304 3.4 41.5 1.0 H5'2 A:UDP304 3.5 22.3 1.0 CB A:ASP112 3.5 19.3 1.0 O3A A:UDP304 3.6 47.7 1.0 PB A:UDP304 3.6 36.9 1.0 HO3' A:UDP304 3.9 22.6 1.0 O3' A:UDP304 4.0 18.8 1.0 HB3 A:ASN255 4.1 38.4 1.0 O A:HOH526 4.1 29.4 1.0 OD1 A:ASP112 4.3 26.1 1.0 C5' A:UDP304 4.3 18.6 1.0 CB A:ASP115 4.3 26.2 1.0 O5' A:UDP304 4.3 25.1 1.0 HA A:ASN255 4.3 36.7 1.0 ND1 A:HIS253 4.4 25.2 1.0 CG A:HIS253 4.4 22.6 1.0 HG23 A:VAL116 4.4 25.9 1.0 O2B A:UDP304 4.5 38.6 1.0 O2A A:UDP304 4.6 53.6 1.0 HA3 A:GLY167 4.6 24.7 1.0 O3B A:UDP304 4.6 34.7 1.0 HB3 A:ASP115 4.6 31.4 1.0 H A:ASP115 4.7 28.0 1.0 HB2 A:ASP115 4.7 31.4 1.0 HB2 A:ASN255 4.7 38.4 1.0 H4' A:UDP304 4.7 19.3 1.0 CB A:ASN255 4.8 32.0 1.0 O A:HOH567 4.8 34.8 1.0 C4' A:UDP304 4.8 16.1 1.0 C3' A:UDP304 4.9 20.9 1.0 O A:HOH499 4.9 39.7 1.0 HA2 A:GLY167 5.0 24.7 1.0 H3' A:UDP304 5.0 25.0 1.0

Magnesium binding site 2 out of 2 in the The Crystal Structure of A Collagen Galactosylhydroxylysyl Glucosyltransferase From Human


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of The Crystal Structure of A Collagen Galactosylhydroxylysyl Glucosyltransferase From Human within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg303 b:29.9 occ:1.00 O A:HOH530 2.1 30.4 1.0 O A:HOH413 2.1 36.4 1.0 O A:HOH556 2.1 29.7 1.0 O3B A:UDP304 2.1 34.7 1.0 O A:HOH450 2.2 26.4 1.0 O A:HOH563 2.2 29.6 1.0 O A:HOH423 3.5 59.0 1.0 PB A:UDP304 3.6 36.9 1.0 HB2 A:GLN192 3.8 24.2 1.0 O2B A:UDP304 4.0 38.6 1.0 O A:HOH540 4.1 29.7 1.0 O A:HOH592 4.1 52.7 1.0 OD1 A:ASP190 4.1 24.8 1.0 OD1 A:ASP191 4.1 28.0 1.0 O A:HOH567 4.1 34.8 1.0 O A:HOH526 4.2 29.4 1.0 HA A:VAL84 4.3 23.6 1.0 HD1 A:TRP145 4.3 32.8 1.0 O A:THR83 4.4 24.7 1.0 HB3 A:GLN192 4.4 24.2 1.0 OE1 A:GLN192 4.4 37.5 1.0 CB A:GLN192 4.6 20.1 1.0 O3A A:UDP304 4.6 47.7 1.0 O1B A:UDP304 4.6 31.7 1.0 H A:GLN192 4.7 22.4 1.0 HE1 A:TRP145 4.7 33.2 1.0 O A:HOH503 4.7 44.9 1.0 O A:HOH434 4.8 47.6 1.0 CD A:GLN192 4.9 35.4 1.0 O A:GLY85 4.9 19.7 1.0 H A:GLY85 4.9 23.9 1.0 HG A:SER166 5.0 35.1 1.0

H.-F.Guo, C.-L.Tsai, M.D.Miller, G.N.Philips Jr., J.A.Tainer, J.M.Kurie. The Crystal Structure of A Collagen Galactosylhydroxylysyl Glucosyltransferase From Human To Be Published.