Magnesium in PDB 6wj2: Cryoem Structure of the SLC38A9-Raga-Ragc-Ragulator Complex in the Pre-Gap State

The binding sites of Magnesium atom in the Cryoem Structure of the SLC38A9-Raga-Ragc-Ragulator Complex in the Pre-Gap State (pdb code 6wj2). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Cryoem Structure of the SLC38A9-Raga-Ragc-Ragulator Complex in the Pre-Gap State, PDB code: 6wj2:

Magnesium binding site 1 out of 1 in the Cryoem Structure of the SLC38A9-Raga-Ragc-Ragulator Complex in the Pre-Gap State


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryoem Structure of the SLC38A9-Raga-Ragc-Ragulator Complex in the Pre-Gap State within 5.0Å range: probe atom residue distance (Å) B Occ G:Mg501 b:49.9 occ:1.00 OG1 G:THR96 2.2 59.2 1.0 O1G G:L8S500 2.4 57.3 1.0 OG G:SER75 2.5 53.9 1.0 O2B G:L8S500 2.7 57.3 1.0 CB G:THR96 3.0 59.2 1.0 PG G:L8S500 3.4 57.3 1.0 CB G:SER75 3.5 53.9 1.0 O3B G:L8S500 3.6 57.3 1.0 PB G:L8S500 3.7 57.3 1.0 CG2 G:THR96 3.7 59.2 1.0 O2G G:L8S500 4.1 57.3 1.0 OD1 G:ASP116 4.1 59.5 1.0 OD2 G:ASP116 4.3 59.5 1.0 CA G:THR96 4.3 59.2 1.0 N G:THR96 4.4 59.2 1.0 CG G:ASP116 4.5 59.5 1.0 O1B G:L8S500 4.6 57.3 1.0 O G:PHE117 4.7 58.6 1.0 CA G:SER75 4.7 53.9 1.0 O G:LYS74 4.8 51.2 1.0 O3A G:L8S500 4.8 57.3 1.0 N G:SER75 4.9 53.9 1.0 C G:LYS74 4.9 51.2 1.0 S3G G:L8S500 4.9 57.3 1.0

S.A.Fromm, R.E.Lawrence, J.H.Hurley. Structural Mechanism For Amino Acid-Dependent Rag Gtpase Nucleotide State Switching By SLC38A9. Nat.Struct.Mol.Biol. V. 27 1017 2020.
ISSN: ESSN 1545-9985
PubMed: 32868926
DOI: 10.1038/S41594-020-0490-9