Magnesium in PDB 6wj6: Cryo-Em Structure of Apo-Photosystem II From Synechocystis Sp. Pcc 6803
Enzymatic activity of Cryo-Em Structure of Apo-Photosystem II From Synechocystis Sp. Pcc 6803
All present enzymatic activity of Cryo-Em Structure of Apo-Photosystem II From Synechocystis Sp. Pcc 6803:
1.10.3.9;
Other elements in 6wj6:
The structure of Cryo-Em Structure of Apo-Photosystem II From Synechocystis Sp. Pcc 6803 also contains other interesting chemical elements:
Magnesium Binding Sites:
Magnesium binding site 1 out
of 35 in 6wj6
Go back to
Magnesium Binding Sites List in 6wj6
Magnesium binding site 1 out
of 35 in the Cryo-Em Structure of Apo-Photosystem II From Synechocystis Sp. Pcc 6803
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 1 of Cryo-Em Structure of Apo-Photosystem II From Synechocystis Sp. Pcc 6803 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg402
b:27.5
occ:1.00
|
MG
|
A:CLA402
|
0.0
|
27.5
|
1.0
|
ND
|
A:CLA402
|
2.0
|
27.5
|
1.0
|
NB
|
A:CLA402
|
2.1
|
27.5
|
1.0
|
NC
|
A:CLA402
|
2.1
|
27.5
|
1.0
|
NA
|
A:CLA402
|
2.2
|
27.5
|
1.0
|
NE2
|
A:HIS198
|
2.9
|
24.8
|
1.0
|
C4D
|
A:CLA402
|
2.9
|
27.5
|
1.0
|
C4B
|
A:CLA402
|
3.0
|
27.5
|
1.0
|
C1B
|
A:CLA402
|
3.1
|
27.5
|
1.0
|
C1C
|
A:CLA402
|
3.1
|
27.5
|
1.0
|
C1D
|
A:CLA402
|
3.1
|
27.5
|
1.0
|
C4A
|
A:CLA402
|
3.2
|
27.5
|
1.0
|
C4C
|
A:CLA402
|
3.2
|
27.5
|
1.0
|
C1A
|
A:CLA402
|
3.2
|
27.5
|
1.0
|
CHC
|
A:CLA402
|
3.4
|
27.5
|
1.0
|
CHB
|
A:CLA402
|
3.4
|
27.5
|
1.0
|
CHA
|
A:CLA402
|
3.5
|
27.5
|
1.0
|
CHD
|
A:CLA402
|
3.6
|
27.5
|
1.0
|
CD2
|
A:HIS198
|
3.7
|
24.8
|
1.0
|
CE
|
A:MET183
|
3.7
|
23.6
|
1.0
|
CE1
|
A:HIS198
|
3.9
|
24.8
|
1.0
|
C3D
|
A:CLA402
|
4.2
|
27.5
|
1.0
|
C3B
|
A:CLA402
|
4.3
|
27.5
|
1.0
|
C2D
|
A:CLA402
|
4.4
|
27.5
|
1.0
|
C2B
|
A:CLA402
|
4.4
|
27.5
|
1.0
|
C2C
|
A:CLA402
|
4.4
|
27.5
|
1.0
|
C3C
|
A:CLA402
|
4.4
|
27.5
|
1.0
|
C3A
|
A:CLA402
|
4.5
|
27.5
|
1.0
|
C2A
|
A:CLA402
|
4.5
|
27.5
|
1.0
|
CAB
|
D:CLA405
|
4.7
|
25.3
|
1.0
|
CG
|
A:HIS198
|
4.9
|
24.8
|
1.0
|
ND1
|
A:HIS198
|
5.0
|
24.8
|
1.0
|
CBD
|
A:CLA402
|
5.0
|
27.5
|
1.0
|
CBB
|
D:CLA405
|
5.0
|
25.3
|
1.0
|
|
Magnesium binding site 2 out
of 35 in 6wj6
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Magnesium Binding Sites List in 6wj6
Magnesium binding site 2 out
of 35 in the Cryo-Em Structure of Apo-Photosystem II From Synechocystis Sp. Pcc 6803
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 2 of Cryo-Em Structure of Apo-Photosystem II From Synechocystis Sp. Pcc 6803 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg403
b:28.1
occ:1.00
|
MG
|
A:CLA403
|
0.0
|
28.1
|
1.0
|
ND
|
A:CLA403
|
2.0
|
28.1
|
1.0
|
NB
|
A:CLA403
|
2.1
|
28.1
|
1.0
|
NC
|
A:CLA403
|
2.1
|
28.1
|
1.0
|
NA
|
A:CLA403
|
2.2
|
28.1
|
1.0
|
C4D
|
A:CLA403
|
2.9
|
28.1
|
1.0
|
C4B
|
A:CLA403
|
3.0
|
28.1
|
1.0
|
O
|
D:HOH540
|
3.0
|
26.1
|
1.0
|
C1B
|
A:CLA403
|
3.1
|
28.1
|
1.0
|
C1C
|
A:CLA403
|
3.1
|
28.1
|
1.0
|
C1D
|
A:CLA403
|
3.1
|
28.1
|
1.0
|
C4C
|
A:CLA403
|
3.2
|
28.1
|
1.0
|
C1A
|
A:CLA403
|
3.2
|
28.1
|
1.0
|
C4A
|
A:CLA403
|
3.2
|
28.1
|
1.0
|
CHC
|
A:CLA403
|
3.4
|
28.1
|
1.0
|
CHB
|
A:CLA403
|
3.5
|
28.1
|
1.0
|
CHA
|
A:CLA403
|
3.5
|
28.1
|
1.0
|
CHD
|
A:CLA403
|
3.6
|
28.1
|
1.0
|
CBB
|
D:PHO403
|
3.9
|
28.3
|
1.0
|
C3D
|
A:CLA403
|
4.2
|
28.1
|
1.0
|
C3B
|
A:CLA403
|
4.3
|
28.1
|
1.0
|
C2D
|
A:CLA403
|
4.4
|
28.1
|
1.0
|
C2B
|
A:CLA403
|
4.4
|
28.1
|
1.0
|
C2C
|
A:CLA403
|
4.4
|
28.1
|
1.0
|
O
|
D:HOH537
|
4.4
|
24.3
|
1.0
|
C3C
|
A:CLA403
|
4.5
|
28.1
|
1.0
|
C2A
|
A:CLA403
|
4.5
|
28.1
|
1.0
|
C3A
|
A:CLA403
|
4.5
|
28.1
|
1.0
|
CG2
|
D:ILE178
|
4.7
|
26.0
|
1.0
|
C20
|
D:PHO403
|
4.8
|
28.3
|
1.0
|
CBA
|
A:CLA403
|
4.9
|
28.1
|
1.0
|
CBD
|
A:CLA403
|
4.9
|
28.1
|
1.0
|
CG1
|
D:ILE178
|
5.0
|
26.0
|
1.0
|
|
Magnesium binding site 3 out
of 35 in 6wj6
Go back to
Magnesium Binding Sites List in 6wj6
Magnesium binding site 3 out
of 35 in the Cryo-Em Structure of Apo-Photosystem II From Synechocystis Sp. Pcc 6803
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 3 of Cryo-Em Structure of Apo-Photosystem II From Synechocystis Sp. Pcc 6803 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg405
b:28.3
occ:1.00
|
MG
|
A:CLA405
|
0.0
|
28.3
|
1.0
|
ND
|
A:CLA405
|
2.0
|
28.3
|
1.0
|
NB
|
A:CLA405
|
2.1
|
28.3
|
1.0
|
NC
|
A:CLA405
|
2.1
|
28.3
|
1.0
|
NA
|
A:CLA405
|
2.2
|
28.3
|
1.0
|
NE2
|
A:HIS118
|
2.8
|
24.5
|
1.0
|
C4D
|
A:CLA405
|
2.9
|
28.3
|
1.0
|
C4B
|
A:CLA405
|
3.0
|
28.3
|
1.0
|
C1B
|
A:CLA405
|
3.1
|
28.3
|
1.0
|
C1C
|
A:CLA405
|
3.1
|
28.3
|
1.0
|
C1D
|
A:CLA405
|
3.1
|
28.3
|
1.0
|
C1A
|
A:CLA405
|
3.2
|
28.3
|
1.0
|
C4C
|
A:CLA405
|
3.2
|
28.3
|
1.0
|
C4A
|
A:CLA405
|
3.2
|
28.3
|
1.0
|
CHC
|
A:CLA405
|
3.4
|
28.3
|
1.0
|
CHB
|
A:CLA405
|
3.5
|
28.3
|
1.0
|
CHA
|
A:CLA405
|
3.5
|
28.3
|
1.0
|
CHD
|
A:CLA405
|
3.6
|
28.3
|
1.0
|
CE1
|
A:HIS118
|
3.6
|
24.5
|
1.0
|
CD2
|
A:HIS118
|
3.8
|
24.5
|
1.0
|
CG2
|
I:VAL12
|
3.8
|
33.1
|
1.0
|
CG1
|
I:VAL8
|
4.1
|
32.8
|
1.0
|
C3D
|
A:CLA405
|
4.2
|
28.3
|
1.0
|
C3B
|
A:CLA405
|
4.3
|
28.3
|
1.0
|
C2D
|
A:CLA405
|
4.4
|
28.3
|
1.0
|
C2B
|
A:CLA405
|
4.4
|
28.3
|
1.0
|
C2C
|
A:CLA405
|
4.4
|
28.3
|
1.0
|
C3C
|
A:CLA405
|
4.5
|
28.3
|
1.0
|
C2A
|
A:CLA405
|
4.5
|
28.3
|
1.0
|
C3A
|
A:CLA405
|
4.5
|
28.3
|
1.0
|
ND1
|
A:HIS118
|
4.8
|
24.5
|
1.0
|
CG
|
A:HIS118
|
4.9
|
24.5
|
1.0
|
CBD
|
A:CLA405
|
4.9
|
28.3
|
1.0
|
|
Magnesium binding site 4 out
of 35 in 6wj6
Go back to
Magnesium Binding Sites List in 6wj6
Magnesium binding site 4 out
of 35 in the Cryo-Em Structure of Apo-Photosystem II From Synechocystis Sp. Pcc 6803
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 4 of Cryo-Em Structure of Apo-Photosystem II From Synechocystis Sp. Pcc 6803 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mg601
b:36.5
occ:1.00
|
MG
|
B:CLA601
|
0.0
|
36.5
|
1.0
|
ND
|
B:CLA601
|
2.0
|
36.5
|
1.0
|
NB
|
B:CLA601
|
2.1
|
36.5
|
1.0
|
NC
|
B:CLA601
|
2.1
|
36.5
|
1.0
|
NA
|
B:CLA601
|
2.2
|
36.5
|
1.0
|
C4D
|
B:CLA601
|
2.9
|
36.5
|
1.0
|
O
|
B:HOH704
|
3.0
|
32.8
|
1.0
|
C4B
|
B:CLA601
|
3.0
|
36.5
|
1.0
|
C1B
|
B:CLA601
|
3.1
|
36.5
|
1.0
|
C1C
|
B:CLA601
|
3.1
|
36.5
|
1.0
|
C1D
|
B:CLA601
|
3.1
|
36.5
|
1.0
|
C4A
|
B:CLA601
|
3.2
|
36.5
|
1.0
|
C4C
|
B:CLA601
|
3.2
|
36.5
|
1.0
|
C1A
|
B:CLA601
|
3.2
|
36.5
|
1.0
|
CHC
|
B:CLA601
|
3.4
|
36.5
|
1.0
|
CHB
|
B:CLA601
|
3.4
|
36.5
|
1.0
|
CHA
|
B:CLA601
|
3.5
|
36.5
|
1.0
|
CHD
|
B:CLA601
|
3.5
|
36.5
|
1.0
|
C11
|
B:CLA601
|
3.6
|
36.5
|
1.0
|
C10
|
B:CLA601
|
3.8
|
36.5
|
1.0
|
C12
|
B:CLA601
|
3.9
|
36.5
|
1.0
|
C3D
|
B:CLA601
|
4.2
|
36.5
|
1.0
|
C3B
|
B:CLA601
|
4.3
|
36.5
|
1.0
|
O
|
B:TRP185
|
4.4
|
30.1
|
1.0
|
C2B
|
B:CLA601
|
4.4
|
36.5
|
1.0
|
C2D
|
B:CLA601
|
4.4
|
36.5
|
1.0
|
C2C
|
B:CLA601
|
4.4
|
36.5
|
1.0
|
C3C
|
B:CLA601
|
4.4
|
36.5
|
1.0
|
C3A
|
B:CLA601
|
4.5
|
36.5
|
1.0
|
C2A
|
B:CLA601
|
4.5
|
36.5
|
1.0
|
C7
|
B:CLA601
|
4.7
|
36.5
|
1.0
|
C14
|
B:CLA601
|
4.7
|
36.5
|
1.0
|
CE2
|
B:PHE190
|
4.8
|
29.4
|
1.0
|
C8
|
B:CLA601
|
4.9
|
36.5
|
1.0
|
C13
|
B:CLA601
|
5.0
|
36.5
|
1.0
|
CBD
|
B:CLA601
|
5.0
|
36.5
|
1.0
|
|
Magnesium binding site 5 out
of 35 in 6wj6
Go back to
Magnesium Binding Sites List in 6wj6
Magnesium binding site 5 out
of 35 in the Cryo-Em Structure of Apo-Photosystem II From Synechocystis Sp. Pcc 6803
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 5 of Cryo-Em Structure of Apo-Photosystem II From Synechocystis Sp. Pcc 6803 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mg602
b:27.7
occ:1.00
|
MG
|
B:CLA602
|
0.0
|
27.7
|
1.0
|
ND
|
B:CLA602
|
2.0
|
27.7
|
1.0
|
NB
|
B:CLA602
|
2.1
|
27.7
|
1.0
|
NC
|
B:CLA602
|
2.1
|
27.7
|
1.0
|
NA
|
B:CLA602
|
2.2
|
27.7
|
1.0
|
ND1
|
B:HIS201
|
2.9
|
25.1
|
1.0
|
C4D
|
B:CLA602
|
2.9
|
27.7
|
1.0
|
C4B
|
B:CLA602
|
3.0
|
27.7
|
1.0
|
C1B
|
B:CLA602
|
3.1
|
27.7
|
1.0
|
C1C
|
B:CLA602
|
3.1
|
27.7
|
1.0
|
C1D
|
B:CLA602
|
3.1
|
27.7
|
1.0
|
C4C
|
B:CLA602
|
3.2
|
27.7
|
1.0
|
C4A
|
B:CLA602
|
3.2
|
27.7
|
1.0
|
C1A
|
B:CLA602
|
3.2
|
27.7
|
1.0
|
CHC
|
B:CLA602
|
3.4
|
27.7
|
1.0
|
CHB
|
B:CLA602
|
3.4
|
27.7
|
1.0
|
CHA
|
B:CLA602
|
3.5
|
27.7
|
1.0
|
CZ
|
H:PHE41
|
3.6
|
36.2
|
1.0
|
CHD
|
B:CLA602
|
3.6
|
27.7
|
1.0
|
CE1
|
B:HIS201
|
3.6
|
25.1
|
1.0
|
CG
|
B:HIS201
|
3.9
|
25.1
|
1.0
|
CE2
|
H:PHE41
|
4.0
|
36.2
|
1.0
|
C3D
|
B:CLA602
|
4.2
|
27.7
|
1.0
|
CB
|
B:HIS201
|
4.3
|
25.1
|
1.0
|
C3B
|
B:CLA602
|
4.3
|
27.7
|
1.0
|
C2D
|
B:CLA602
|
4.4
|
27.7
|
1.0
|
C2B
|
B:CLA602
|
4.4
|
27.7
|
1.0
|
C2C
|
B:CLA602
|
4.4
|
27.7
|
1.0
|
C3C
|
B:CLA602
|
4.4
|
27.7
|
1.0
|
C3A
|
B:CLA602
|
4.5
|
27.7
|
1.0
|
C2A
|
B:CLA602
|
4.5
|
27.7
|
1.0
|
CE1
|
H:PHE41
|
4.7
|
36.2
|
1.0
|
CE1
|
B:PHE190
|
4.7
|
29.4
|
1.0
|
NE2
|
B:HIS201
|
4.8
|
25.1
|
1.0
|
CA
|
B:HIS201
|
4.9
|
25.1
|
1.0
|
CD2
|
B:HIS201
|
4.9
|
25.1
|
1.0
|
CBD
|
B:CLA602
|
4.9
|
27.7
|
1.0
|
|
Magnesium binding site 6 out
of 35 in 6wj6
Go back to
Magnesium Binding Sites List in 6wj6
Magnesium binding site 6 out
of 35 in the Cryo-Em Structure of Apo-Photosystem II From Synechocystis Sp. Pcc 6803
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 6 of Cryo-Em Structure of Apo-Photosystem II From Synechocystis Sp. Pcc 6803 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mg603
b:26.1
occ:1.00
|
MG
|
B:CLA603
|
0.0
|
26.1
|
1.0
|
ND
|
B:CLA603
|
2.0
|
26.1
|
1.0
|
NB
|
B:CLA603
|
2.1
|
26.1
|
1.0
|
NC
|
B:CLA603
|
2.1
|
26.1
|
1.0
|
NA
|
B:CLA603
|
2.2
|
26.1
|
1.0
|
NE2
|
B:HIS202
|
2.9
|
24.6
|
1.0
|
C4D
|
B:CLA603
|
2.9
|
26.1
|
1.0
|
C4B
|
B:CLA603
|
3.0
|
26.1
|
1.0
|
C1B
|
B:CLA603
|
3.1
|
26.1
|
1.0
|
C1C
|
B:CLA603
|
3.1
|
26.1
|
1.0
|
C1D
|
B:CLA603
|
3.1
|
26.1
|
1.0
|
C4C
|
B:CLA603
|
3.2
|
26.1
|
1.0
|
C1A
|
B:CLA603
|
3.2
|
26.1
|
1.0
|
C4A
|
B:CLA603
|
3.2
|
26.1
|
1.0
|
CHC
|
B:CLA603
|
3.4
|
26.1
|
1.0
|
CHB
|
B:CLA603
|
3.4
|
26.1
|
1.0
|
CHA
|
B:CLA603
|
3.5
|
26.1
|
1.0
|
CHD
|
B:CLA603
|
3.5
|
26.1
|
1.0
|
CD2
|
B:HIS202
|
3.6
|
24.6
|
1.0
|
C9
|
B:CLA605
|
3.7
|
25.6
|
1.0
|
C6
|
B:CLA605
|
3.9
|
25.6
|
1.0
|
CE1
|
B:HIS202
|
3.9
|
24.6
|
1.0
|
C3D
|
B:CLA603
|
4.1
|
26.1
|
1.0
|
C7
|
B:CLA605
|
4.2
|
25.6
|
1.0
|
C3B
|
B:CLA603
|
4.3
|
26.1
|
1.0
|
C2D
|
B:CLA603
|
4.4
|
26.1
|
1.0
|
C2B
|
B:CLA603
|
4.4
|
26.1
|
1.0
|
C2C
|
B:CLA603
|
4.4
|
26.1
|
1.0
|
C3C
|
B:CLA603
|
4.4
|
26.1
|
1.0
|
C2A
|
B:CLA603
|
4.5
|
26.1
|
1.0
|
C3A
|
B:CLA603
|
4.5
|
26.1
|
1.0
|
C8
|
B:CLA605
|
4.5
|
25.6
|
1.0
|
C4
|
B:CLA605
|
4.8
|
25.6
|
1.0
|
NE2
|
B:HIS201
|
4.8
|
25.1
|
1.0
|
CG
|
B:HIS202
|
4.9
|
24.6
|
1.0
|
CBD
|
B:CLA603
|
4.9
|
26.1
|
1.0
|
C5
|
B:CLA605
|
4.9
|
25.6
|
1.0
|
CBA
|
B:CLA603
|
5.0
|
26.1
|
1.0
|
ND1
|
B:HIS202
|
5.0
|
24.6
|
1.0
|
|
Magnesium binding site 7 out
of 35 in 6wj6
Go back to
Magnesium Binding Sites List in 6wj6
Magnesium binding site 7 out
of 35 in the Cryo-Em Structure of Apo-Photosystem II From Synechocystis Sp. Pcc 6803
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 7 of Cryo-Em Structure of Apo-Photosystem II From Synechocystis Sp. Pcc 6803 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mg604
b:24.8
occ:1.00
|
MG
|
B:CLA604
|
0.0
|
24.8
|
1.0
|
ND
|
B:CLA604
|
2.0
|
24.8
|
1.0
|
NB
|
B:CLA604
|
2.1
|
24.8
|
1.0
|
NC
|
B:CLA604
|
2.1
|
24.8
|
1.0
|
NA
|
B:CLA604
|
2.2
|
24.8
|
1.0
|
NE2
|
B:HIS455
|
2.8
|
20.3
|
1.0
|
C4D
|
B:CLA604
|
2.9
|
24.8
|
1.0
|
C4B
|
B:CLA604
|
3.0
|
24.8
|
1.0
|
C1B
|
B:CLA604
|
3.1
|
24.8
|
1.0
|
C1C
|
B:CLA604
|
3.1
|
24.8
|
1.0
|
C1D
|
B:CLA604
|
3.1
|
24.8
|
1.0
|
C4A
|
B:CLA604
|
3.2
|
24.8
|
1.0
|
C4C
|
B:CLA604
|
3.2
|
24.8
|
1.0
|
C1A
|
B:CLA604
|
3.2
|
24.8
|
1.0
|
CHC
|
B:CLA604
|
3.4
|
24.8
|
1.0
|
C14
|
B:CLA612
|
3.4
|
22.5
|
1.0
|
CHB
|
B:CLA604
|
3.4
|
24.8
|
1.0
|
CHA
|
B:CLA604
|
3.5
|
24.8
|
1.0
|
CD2
|
B:HIS455
|
3.5
|
20.3
|
1.0
|
CHD
|
B:CLA604
|
3.6
|
24.8
|
1.0
|
CE1
|
B:HIS455
|
3.8
|
20.3
|
1.0
|
C3D
|
B:CLA604
|
4.1
|
24.8
|
1.0
|
C13
|
B:CLA612
|
4.3
|
22.5
|
1.0
|
C3B
|
B:CLA604
|
4.3
|
24.8
|
1.0
|
C2D
|
B:CLA604
|
4.4
|
24.8
|
1.0
|
C2B
|
B:CLA604
|
4.4
|
24.8
|
1.0
|
C2C
|
B:CLA604
|
4.4
|
24.8
|
1.0
|
C3C
|
B:CLA604
|
4.5
|
24.8
|
1.0
|
C15
|
B:CLA612
|
4.5
|
22.5
|
1.0
|
C3A
|
B:CLA604
|
4.5
|
24.8
|
1.0
|
C2A
|
B:CLA604
|
4.5
|
24.8
|
1.0
|
CG
|
B:HIS455
|
4.7
|
20.3
|
1.0
|
CAB
|
B:CLA613
|
4.7
|
23.9
|
1.0
|
ND1
|
B:HIS455
|
4.8
|
20.3
|
1.0
|
CBD
|
B:CLA604
|
5.0
|
24.8
|
1.0
|
|
Magnesium binding site 8 out
of 35 in 6wj6
Go back to
Magnesium Binding Sites List in 6wj6
Magnesium binding site 8 out
of 35 in the Cryo-Em Structure of Apo-Photosystem II From Synechocystis Sp. Pcc 6803
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 8 of Cryo-Em Structure of Apo-Photosystem II From Synechocystis Sp. Pcc 6803 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mg605
b:25.6
occ:1.00
|
MG
|
B:CLA605
|
0.0
|
25.6
|
1.0
|
ND
|
B:CLA605
|
2.0
|
25.6
|
1.0
|
NB
|
B:CLA605
|
2.1
|
25.6
|
1.0
|
NC
|
B:CLA605
|
2.1
|
25.6
|
1.0
|
NA
|
B:CLA605
|
2.2
|
25.6
|
1.0
|
NE2
|
B:HIS100
|
2.9
|
26.2
|
1.0
|
C4D
|
B:CLA605
|
2.9
|
25.6
|
1.0
|
C4B
|
B:CLA605
|
3.0
|
25.6
|
1.0
|
C1B
|
B:CLA605
|
3.1
|
25.6
|
1.0
|
C1C
|
B:CLA605
|
3.1
|
25.6
|
1.0
|
C1D
|
B:CLA605
|
3.1
|
25.6
|
1.0
|
C4C
|
B:CLA605
|
3.2
|
25.6
|
1.0
|
C4A
|
B:CLA605
|
3.2
|
25.6
|
1.0
|
C1A
|
B:CLA605
|
3.2
|
25.6
|
1.0
|
CHC
|
B:CLA605
|
3.4
|
25.6
|
1.0
|
CHB
|
B:CLA605
|
3.5
|
25.6
|
1.0
|
CHA
|
B:CLA605
|
3.5
|
25.6
|
1.0
|
CHD
|
B:CLA605
|
3.5
|
25.6
|
1.0
|
C1
|
B:CLA604
|
3.6
|
24.8
|
1.0
|
CD2
|
B:HIS100
|
3.6
|
26.2
|
1.0
|
CE1
|
B:HIS100
|
4.0
|
26.2
|
1.0
|
C2
|
B:CLA604
|
4.1
|
24.8
|
1.0
|
C3D
|
B:CLA605
|
4.1
|
25.6
|
1.0
|
C3B
|
B:CLA605
|
4.3
|
25.6
|
1.0
|
C2D
|
B:CLA605
|
4.4
|
25.6
|
1.0
|
C2B
|
B:CLA605
|
4.4
|
25.6
|
1.0
|
C2C
|
B:CLA605
|
4.4
|
25.6
|
1.0
|
C3C
|
B:CLA605
|
4.4
|
25.6
|
1.0
|
C4
|
B:CLA604
|
4.4
|
24.8
|
1.0
|
O2A
|
B:CLA604
|
4.5
|
24.8
|
1.0
|
C3
|
B:CLA604
|
4.5
|
24.8
|
1.0
|
C3A
|
B:CLA605
|
4.5
|
25.6
|
1.0
|
C2A
|
B:CLA605
|
4.5
|
25.6
|
1.0
|
CG
|
B:HIS100
|
4.9
|
26.2
|
1.0
|
CBA
|
B:CLA605
|
4.9
|
25.6
|
1.0
|
CBD
|
B:CLA605
|
5.0
|
25.6
|
1.0
|
O1A
|
B:CLA604
|
5.0
|
24.8
|
1.0
|
|
Magnesium binding site 9 out
of 35 in 6wj6
Go back to
Magnesium Binding Sites List in 6wj6
Magnesium binding site 9 out
of 35 in the Cryo-Em Structure of Apo-Photosystem II From Synechocystis Sp. Pcc 6803
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 9 of Cryo-Em Structure of Apo-Photosystem II From Synechocystis Sp. Pcc 6803 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mg606
b:30.9
occ:1.00
|
MG
|
B:CLA606
|
0.0
|
30.9
|
1.0
|
ND
|
B:CLA606
|
2.0
|
30.9
|
1.0
|
NB
|
B:CLA606
|
2.1
|
30.9
|
1.0
|
NC
|
B:CLA606
|
2.1
|
30.9
|
1.0
|
NA
|
B:CLA606
|
2.2
|
30.9
|
1.0
|
C4D
|
B:CLA606
|
2.9
|
30.9
|
1.0
|
C4B
|
B:CLA606
|
3.0
|
30.9
|
1.0
|
ND1
|
B:HIS157
|
3.0
|
28.7
|
1.0
|
C1B
|
B:CLA606
|
3.1
|
30.9
|
1.0
|
C1C
|
B:CLA606
|
3.1
|
30.9
|
1.0
|
C1D
|
B:CLA606
|
3.1
|
30.9
|
1.0
|
C4C
|
B:CLA606
|
3.2
|
30.9
|
1.0
|
C4A
|
B:CLA606
|
3.2
|
30.9
|
1.0
|
C1A
|
B:CLA606
|
3.2
|
30.9
|
1.0
|
C6
|
B:LMT622
|
3.3
|
38.7
|
1.0
|
CHC
|
B:CLA606
|
3.4
|
30.9
|
1.0
|
CHB
|
B:CLA606
|
3.4
|
30.9
|
1.0
|
C5
|
B:LMT622
|
3.4
|
38.7
|
1.0
|
CHA
|
B:CLA606
|
3.5
|
30.9
|
1.0
|
CHD
|
B:CLA606
|
3.5
|
30.9
|
1.0
|
CE1
|
B:HIS157
|
3.8
|
28.7
|
1.0
|
C4
|
B:LMT622
|
3.8
|
38.7
|
1.0
|
CG
|
B:HIS157
|
4.1
|
28.7
|
1.0
|
C3D
|
B:CLA606
|
4.1
|
30.9
|
1.0
|
C3B
|
B:CLA606
|
4.3
|
30.9
|
1.0
|
C2D
|
B:CLA606
|
4.4
|
30.9
|
1.0
|
C2B
|
B:CLA606
|
4.4
|
30.9
|
1.0
|
CB
|
B:HIS157
|
4.4
|
28.7
|
1.0
|
C2C
|
B:CLA606
|
4.4
|
30.9
|
1.0
|
C3C
|
B:CLA606
|
4.4
|
30.9
|
1.0
|
C3
|
B:LMT622
|
4.5
|
38.7
|
1.0
|
C3A
|
B:CLA606
|
4.5
|
30.9
|
1.0
|
C2A
|
B:CLA606
|
4.5
|
30.9
|
1.0
|
C7
|
B:LMT622
|
4.7
|
38.7
|
1.0
|
CBA
|
B:CLA606
|
4.9
|
30.9
|
1.0
|
CBD
|
B:CLA606
|
4.9
|
30.9
|
1.0
|
NE2
|
B:HIS157
|
5.0
|
28.7
|
1.0
|
|
Magnesium binding site 10 out
of 35 in 6wj6
Go back to
Magnesium Binding Sites List in 6wj6
Magnesium binding site 10 out
of 35 in the Cryo-Em Structure of Apo-Photosystem II From Synechocystis Sp. Pcc 6803
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 10 of Cryo-Em Structure of Apo-Photosystem II From Synechocystis Sp. Pcc 6803 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mg607
b:27.7
occ:1.00
|
MG
|
B:CLA607
|
0.0
|
27.7
|
1.0
|
ND
|
B:CLA607
|
2.0
|
27.7
|
1.0
|
NB
|
B:CLA607
|
2.1
|
27.7
|
1.0
|
NC
|
B:CLA607
|
2.1
|
27.7
|
1.0
|
NA
|
B:CLA607
|
2.2
|
27.7
|
1.0
|
O
|
B:HOH760
|
2.9
|
25.4
|
1.0
|
C4D
|
B:CLA607
|
2.9
|
27.7
|
1.0
|
C4B
|
B:CLA607
|
3.0
|
27.7
|
1.0
|
C1B
|
B:CLA607
|
3.1
|
27.7
|
1.0
|
C1C
|
B:CLA607
|
3.1
|
27.7
|
1.0
|
C1D
|
B:CLA607
|
3.1
|
27.7
|
1.0
|
C4C
|
B:CLA607
|
3.2
|
27.7
|
1.0
|
C4A
|
B:CLA607
|
3.2
|
27.7
|
1.0
|
C1A
|
B:CLA607
|
3.2
|
27.7
|
1.0
|
CHC
|
B:CLA607
|
3.4
|
27.7
|
1.0
|
CHB
|
B:CLA607
|
3.5
|
27.7
|
1.0
|
C13
|
B:LMG621
|
3.5
|
31.5
|
1.0
|
CHA
|
B:CLA607
|
3.5
|
27.7
|
1.0
|
CHD
|
B:CLA607
|
3.5
|
27.7
|
1.0
|
C15
|
B:LMG621
|
4.0
|
31.5
|
1.0
|
C14
|
B:LMG621
|
4.0
|
31.5
|
1.0
|
C12
|
B:LMG621
|
4.0
|
31.5
|
1.0
|
C11
|
B:LMG621
|
4.1
|
31.5
|
1.0
|
C3D
|
B:CLA607
|
4.2
|
27.7
|
1.0
|
O
|
B:HOH720
|
4.3
|
27.2
|
1.0
|
C3B
|
B:CLA607
|
4.3
|
27.7
|
1.0
|
C2D
|
B:CLA607
|
4.4
|
27.7
|
1.0
|
C2B
|
B:CLA607
|
4.4
|
27.7
|
1.0
|
C2C
|
B:CLA607
|
4.4
|
27.7
|
1.0
|
C3C
|
B:CLA607
|
4.4
|
27.7
|
1.0
|
C3A
|
B:CLA607
|
4.5
|
27.7
|
1.0
|
C2A
|
B:CLA607
|
4.5
|
27.7
|
1.0
|
CBA
|
B:CLA607
|
4.7
|
27.7
|
1.0
|
CE
|
B:MET37
|
4.8
|
25.4
|
1.0
|
SD
|
B:MET37
|
4.9
|
25.4
|
1.0
|
C16
|
B:LMG621
|
4.9
|
31.5
|
1.0
|
O9
|
B:LMG621
|
5.0
|
31.5
|
1.0
|
CBD
|
B:CLA607
|
5.0
|
27.7
|
1.0
|
CD2
|
B:PHE61
|
5.0
|
26.2
|
1.0
|
|
Reference:
C.J.Gisriel,
K.Zhou,
H.Huang,
R.J.Debus,
Y.Xiong,
G.W.Brudvig.
Cryo-Em Structure of Monomeric Photosystem II From Synechocystis Sp. Pcc 6803 Lacking the Water-Oxidation Complex Joule 2020.
ISSN: ESSN 2542-4351
DOI: 10.1016/J.JOULE.2020.07.016
Page generated: Tue Oct 1 23:00:18 2024
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