Magnesium in PDB 6wjz: Crystal Structure of Human Ribokinase in Complex with Ampcp

All present enzymatic activity of Crystal Structure of Human Ribokinase in Complex with Ampcp:
2.7.1.15;

The structure of Crystal Structure of Human Ribokinase in Complex with Ampcp, PDB code: 6wjz was solved by J.Park, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	56.49 / 1.80
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	46.11, 71.86, 91.43, 90, 91.78, 90
R / Rfree (%)	15.2 / 18.6

The structure of Crystal Structure of Human Ribokinase in Complex with Ampcp also contains other interesting chemical elements:

Sodium

(Na)

2 atoms

The binding sites of Magnesium atom in the Crystal Structure of Human Ribokinase in Complex with Ampcp (pdb code 6wjz). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of Human Ribokinase in Complex with Ampcp, PDB code: 6wjz:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Crystal Structure of Human Ribokinase in Complex with Ampcp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Human Ribokinase in Complex with Ampcp within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg408 b:51.6 occ:1.00 O A:HOH598 1.9 46.2 1.0 O1B A:A12401 2.0 47.5 1.0 O A:HOH601 2.1 42.5 1.0 O1A A:A12401 2.1 35.4 1.0 O A:HOH514 2.1 35.3 1.0 O A:HOH651 2.3 37.8 1.0 PB A:A12401 3.0 47.9 1.0 O2B A:A12401 3.5 52.0 1.0 PA A:A12401 3.6 34.0 1.0 C3A A:A12401 3.9 42.8 1.0 O A:HOH512 4.1 38.6 1.0 O A:HOH547 4.2 54.4 1.0 O5' A:A12401 4.3 29.2 1.0 OG1 A:THR264 4.3 36.1 1.0 CB A:THR264 4.3 34.7 1.0 O3B A:A12401 4.4 39.6 1.0 N7 A:A12401 4.5 31.5 1.0 C8 A:A12401 4.5 28.2 1.0 O2A A:A12401 4.6 35.4 1.0 O A:THR264 4.6 29.6 1.0 CA A:GLY237 4.7 26.8 1.0

Magnesium binding site 2 out of 2 in the Crystal Structure of Human Ribokinase in Complex with Ampcp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of Human Ribokinase in Complex with Ampcp within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg404 b:48.2 occ:1.00 O1A B:A12401 1.8 40.8 1.0 O B:HOH531 2.0 43.3 1.0 O B:HOH623 2.1 44.8 1.0 O1B B:A12401 2.1 42.0 1.0 O B:HOH521 2.2 53.3 1.0 O B:HOH597 2.4 39.0 1.0 PB B:A12401 3.2 48.7 1.0 PA B:A12401 3.2 39.4 1.0 O3B B:A12401 3.6 42.3 1.0 C3A B:A12401 3.8 45.8 1.0 O5' B:A12401 4.0 36.1 1.0 O2A B:A12401 4.3 44.0 1.0 OG1 B:THR264 4.4 33.0 1.0 CB B:THR264 4.4 32.8 1.0 N7 B:A12401 4.5 30.5 1.0 C8 B:A12401 4.5 31.4 1.0 O2B B:A12401 4.5 47.1 1.0 CA B:GLY237 4.6 36.7 1.0 O B:THR264 4.7 32.6 1.0 O B:HOH503 4.8 44.9 1.0

J.Park, J.Park. N/A N/A.