Magnesium in PDB 6wmd: Human SUN2-KASH4 Complex

The structure of Human SUN2-KASH4 Complex, PDB code: 6wmd was solved by V.E.Cruz, T.U.Schwartz, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	69.94 / 1.50
Space group	P 63 2 2
Cell size a, b, c (Å), α, β, γ (°)	80.757, 80.757, 173.909, 90.00, 90.00, 120.00
R / Rfree (%)	16.7 / 18.4

The binding sites of Magnesium atom in the Human SUN2-KASH4 Complex (pdb code 6wmd). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Human SUN2-KASH4 Complex, PDB code: 6wmd:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Human SUN2-KASH4 Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Human SUN2-KASH4 Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg801 b:15.7 occ:0.42 O A:HOH986 2.0 22.6 1.0 O A:HOH1181 2.0 22.1 1.0 O A:HOH1002 2.2 20.0 1.0 O A:HOH1058 4.2 24.4 1.0 O A:HOH1160 4.2 42.1 1.0 OD2 A:ASP670 4.2 22.6 1.0 OD1 A:ASP670 4.2 19.7 1.0 O A:HOH1121 4.3 38.0 1.0 O A:HOH1170 4.4 23.9 1.0 O A:HOH1199 4.5 71.9 1.0 CG A:ASP670 4.6 21.4 1.0 O A:HOH1016 5.0 26.9 1.0

Magnesium binding site 2 out of 2 in the Human SUN2-KASH4 Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Human SUN2-KASH4 Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg802 b:38.3 occ:1.00 O A:HOH1008 2.0 39.5 1.0 O A:HOH1210 2.1 44.2 1.0 O A:HOH931 2.1 23.4 1.0 O A:HOH968 2.1 40.4 1.0 O A:HOH1150 2.2 40.9 1.0 O A:HOH1155 2.2 38.1 1.0 O A:GLN608 4.2 25.1 1.0 OE1 A:GLN605 4.2 63.2 1.0 O A:GLN605 4.2 25.1 1.0 O A:HOH926 4.2 33.0 1.0 O A:HOH1139 4.3 60.4 1.0 OE1 A:GLN608 4.4 34.8 1.0 O A:HOH1149 4.5 35.8 1.0 CB A:GLN608 4.6 27.0 1.0 N A:GLN608 4.9 24.6 1.0 CA A:GLY606 4.9 22.5 1.0 CD A:PRO607 5.0 25.2 1.0

V.E.Cruz, F.Esra Demircioglu, T.U.Schwartz. Structural Analysis of Different Linc Complexes Reveals Distinct Binding Modes. J.Mol.Biol. V. 432 6028 2020.
ISSN: ESSN 1089-8638
PubMed: 33058875
DOI: 10.1016/J.JMB.2020.09.019