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Magnesium in PDB 6wmt: F. Tularensis RNAPS70-(Mgla-Sspa)-Ppgpp-Pigr-Igla Dna Complex

Enzymatic activity of F. Tularensis RNAPS70-(Mgla-Sspa)-Ppgpp-Pigr-Igla Dna Complex

All present enzymatic activity of F. Tularensis RNAPS70-(Mgla-Sspa)-Ppgpp-Pigr-Igla Dna Complex:
2.7.7.6;

Other elements in 6wmt:

The structure of F. Tularensis RNAPS70-(Mgla-Sspa)-Ppgpp-Pigr-Igla Dna Complex also contains other interesting chemical elements:

Zinc (Zn) 2 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the F. Tularensis RNAPS70-(Mgla-Sspa)-Ppgpp-Pigr-Igla Dna Complex (pdb code 6wmt). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the F. Tularensis RNAPS70-(Mgla-Sspa)-Ppgpp-Pigr-Igla Dna Complex, PDB code: 6wmt:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 6wmt

Go back to Magnesium Binding Sites List in 6wmt
Magnesium binding site 1 out of 2 in the F. Tularensis RNAPS70-(Mgla-Sspa)-Ppgpp-Pigr-Igla Dna Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of F. Tularensis RNAPS70-(Mgla-Sspa)-Ppgpp-Pigr-Igla Dna Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg1701

b:71.5
occ:1.00
OD2 D:ASP460 2.8 67.7 1.0
OD1 D:ASP458 3.2 72.5 1.0
OD1 D:ASP462 3.6 73.3 1.0
OD2 D:ASP462 3.6 73.3 1.0
CG D:ASP460 3.7 67.7 1.0
OD1 D:ASP460 3.8 67.7 1.0
CG D:ASP462 4.0 73.3 1.0
CG D:ASP458 4.0 72.5 1.0
OD2 D:ASP458 4.1 72.5 1.0
NH2 D:ARG423 4.4 69.0 1.0

Magnesium binding site 2 out of 2 in 6wmt

Go back to Magnesium Binding Sites List in 6wmt
Magnesium binding site 2 out of 2 in the F. Tularensis RNAPS70-(Mgla-Sspa)-Ppgpp-Pigr-Igla Dna Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of F. Tularensis RNAPS70-(Mgla-Sspa)-Ppgpp-Pigr-Igla Dna Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
S:Mg301

b:60.6
occ:1.00
O1B M:G4P301 3.2 47.1 1.0
O1C M:G4P301 3.3 48.0 1.0
OH S:TYR103 3.6 0.3 1.0
CE2 S:TYR103 3.8 0.3 1.0
O2B M:G4P301 3.9 78.6 1.0
PB M:G4P301 4.1 56.0 1.0
O1D M:G4P301 4.1 58.3 1.0
CZ S:TYR103 4.1 0.3 1.0
O3D M:G4P301 4.2 56.5 1.0
O S:ASN100 4.2 0.8 1.0
PD M:G4P301 4.7 56.6 1.0
PC M:G4P301 4.7 50.8 1.0
O3A M:G4P301 4.9 61.4 1.0
CD2 S:TYR103 4.9 0.3 1.0

Reference:

B.A.Travis, K.M.Ramsey, S.M.Prezioso, T.Tallo, J.M.Wandzilak, A.Hsu, M.Borgnia, A.Bartesaghi, S.L.Dove, R.G.Brennan, M.A.Schumacher. Structural Basis For Virulence Activation of Francisella Tularensis. Mol.Cell 2020.
ISSN: ISSN 1097-2765
PubMed: 33217319
DOI: 10.1016/J.MOLCEL.2020.10.035
Page generated: Tue Oct 1 23:03:01 2024

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