Magnesium in PDB 6wmt: F. Tularensis RNAPS70-(Mgla-Sspa)-Ppgpp-Pigr-Igla Dna Complex

All present enzymatic activity of F. Tularensis RNAPS70-(Mgla-Sspa)-Ppgpp-Pigr-Igla Dna Complex:
2.7.7.6;

The structure of F. Tularensis RNAPS70-(Mgla-Sspa)-Ppgpp-Pigr-Igla Dna Complex also contains other interesting chemical elements:

Zinc

(Zn)

2 atoms

The binding sites of Magnesium atom in the F. Tularensis RNAPS70-(Mgla-Sspa)-Ppgpp-Pigr-Igla Dna Complex (pdb code 6wmt). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the F. Tularensis RNAPS70-(Mgla-Sspa)-Ppgpp-Pigr-Igla Dna Complex, PDB code: 6wmt:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the F. Tularensis RNAPS70-(Mgla-Sspa)-Ppgpp-Pigr-Igla Dna Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of F. Tularensis RNAPS70-(Mgla-Sspa)-Ppgpp-Pigr-Igla Dna Complex within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg1701 b:71.5 occ:1.00 OD2 D:ASP460 2.8 67.7 1.0 OD1 D:ASP458 3.2 72.5 1.0 OD1 D:ASP462 3.6 73.3 1.0 OD2 D:ASP462 3.6 73.3 1.0 CG D:ASP460 3.7 67.7 1.0 OD1 D:ASP460 3.8 67.7 1.0 CG D:ASP462 4.0 73.3 1.0 CG D:ASP458 4.0 72.5 1.0 OD2 D:ASP458 4.1 72.5 1.0 NH2 D:ARG423 4.4 69.0 1.0

Magnesium binding site 2 out of 2 in the F. Tularensis RNAPS70-(Mgla-Sspa)-Ppgpp-Pigr-Igla Dna Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of F. Tularensis RNAPS70-(Mgla-Sspa)-Ppgpp-Pigr-Igla Dna Complex within 5.0Å range: probe atom residue distance (Å) B Occ S:Mg301 b:60.6 occ:1.00 O1B M:G4P301 3.2 47.1 1.0 O1C M:G4P301 3.3 48.0 1.0 OH S:TYR103 3.6 0.3 1.0 CE2 S:TYR103 3.8 0.3 1.0 O2B M:G4P301 3.9 78.6 1.0 PB M:G4P301 4.1 56.0 1.0 O1D M:G4P301 4.1 58.3 1.0 CZ S:TYR103 4.1 0.3 1.0 O3D M:G4P301 4.2 56.5 1.0 O S:ASN100 4.2 0.8 1.0 PD M:G4P301 4.7 56.6 1.0 PC M:G4P301 4.7 50.8 1.0 O3A M:G4P301 4.9 61.4 1.0 CD2 S:TYR103 4.9 0.3 1.0

B.A.Travis, K.M.Ramsey, S.M.Prezioso, T.Tallo, J.M.Wandzilak, A.Hsu, M.Borgnia, A.Bartesaghi, S.L.Dove, R.G.Brennan, M.A.Schumacher. Structural Basis For Virulence Activation of Francisella Tularensis. Mol.Cell 2020.
ISSN: ISSN 1097-2765
PubMed: 33217319
DOI: 10.1016/J.MOLCEL.2020.10.035