Atomistry » Magnesium » PDB 6wph-6wwk » 6wqy
Atomistry »
  Magnesium »
    PDB 6wph-6wwk »
      6wqy »

Magnesium in PDB 6wqy: GH5-4 Broad Specificity Endoglucanase From Bacteroides Salanitronis

Enzymatic activity of GH5-4 Broad Specificity Endoglucanase From Bacteroides Salanitronis

All present enzymatic activity of GH5-4 Broad Specificity Endoglucanase From Bacteroides Salanitronis:
3.2.1.4;

Protein crystallography data

The structure of GH5-4 Broad Specificity Endoglucanase From Bacteroides Salanitronis, PDB code: 6wqy was solved by C.A.Bingman, R.W.Smith, E.M.Glasgow, B.G.Fox, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.24 / 1.05
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 40.480, 92.310, 95.150, 90.00, 90.00, 90.00
R / Rfree (%) 13.9 / 14.5

Other elements in 6wqy:

The structure of GH5-4 Broad Specificity Endoglucanase From Bacteroides Salanitronis also contains other interesting chemical elements:

Chlorine (Cl) 2 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the GH5-4 Broad Specificity Endoglucanase From Bacteroides Salanitronis (pdb code 6wqy). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 4 binding sites of Magnesium where determined in the GH5-4 Broad Specificity Endoglucanase From Bacteroides Salanitronis, PDB code: 6wqy:
Jump to Magnesium binding site number: 1; 2; 3; 4;

Magnesium binding site 1 out of 4 in 6wqy

Go back to Magnesium Binding Sites List in 6wqy
Magnesium binding site 1 out of 4 in the GH5-4 Broad Specificity Endoglucanase From Bacteroides Salanitronis


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of GH5-4 Broad Specificity Endoglucanase From Bacteroides Salanitronis within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg401

b:62.5
occ:1.00
O A:HOH887 1.9 36.5 1.0
O A:HOH838 2.3 43.6 1.0
OD1 A:ASN46 2.9 27.9 1.0
HD21 A:ASN46 3.9 40.6 1.0
CG A:ASN46 4.0 25.8 1.0
ND2 A:ASN46 4.3 33.9 1.0
O A:HOH800 4.8 31.8 1.0
OD1 A:ASN45 4.8 19.6 1.0
HD21 A:ASN45 4.9 32.0 1.0

Magnesium binding site 2 out of 4 in 6wqy

Go back to Magnesium Binding Sites List in 6wqy
Magnesium binding site 2 out of 4 in the GH5-4 Broad Specificity Endoglucanase From Bacteroides Salanitronis


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of GH5-4 Broad Specificity Endoglucanase From Bacteroides Salanitronis within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg402

b:55.3
occ:1.00
O A:HOH585 2.4 44.8 1.0
HG1 A:THR140 3.7 20.1 1.0
OG1 A:THR140 3.7 16.8 1.0
O A:HOH700 4.0 28.5 1.0
HG3 A:GLU139 4.5 17.4 1.0
OE2 A:GLU139 4.6 19.6 1.0
O A:HOH1005 4.7 32.9 1.0
O A:HOH723 4.7 31.7 1.0
O A:HOH814 4.7 34.5 1.0
HG23 A:THR140 4.8 24.6 1.0

Magnesium binding site 3 out of 4 in 6wqy

Go back to Magnesium Binding Sites List in 6wqy
Magnesium binding site 3 out of 4 in the GH5-4 Broad Specificity Endoglucanase From Bacteroides Salanitronis


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of GH5-4 Broad Specificity Endoglucanase From Bacteroides Salanitronis within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg403

b:16.7
occ:1.00
O A:HOH526 2.0 14.8 1.0
O A:HOH782 2.0 15.0 1.0
O A:HOH512 2.0 16.8 1.0
OE1 A:GLU95 2.0 11.4 0.6
O A:HOH936 2.1 17.5 1.0
O A:HOH731 2.2 13.7 1.0
HG3 A:GLU95 2.7 17.7 0.4
CD A:GLU95 3.1 11.3 0.6
HG2 A:GLU95 3.4 17.7 0.4
CG A:GLU95 3.4 14.8 0.4
OE2 A:GLU95 3.4 13.5 0.6
OE2 A:GLU95 3.8 11.9 0.4
CD A:GLU95 4.1 15.0 0.4
O A:HOH1029 4.2 22.2 1.0
HD23 A:LEU98 4.3 18.1 1.0
O A:HOH653 4.3 14.2 1.0
HG23 A:THR92 4.3 15.0 1.0
HB2 A:GLU95 4.4 13.5 0.6
CG A:GLU95 4.4 11.9 0.6
O A:HOH982 4.4 16.8 1.0
O A:ILE93 4.5 11.9 1.0
OE1 A:GLN155 4.5 12.3 1.0
HG2 A:GLU95 4.6 14.3 0.6
HA A:GLU95 4.6 12.8 0.6
CB A:GLU95 4.6 13.8 0.4
HB3 A:GLU95 4.7 16.6 0.4
HA A:GLU95 4.7 15.9 0.4
HG2 A:GLN155 4.8 12.8 1.0
HD22 A:LEU98 4.8 18.1 1.0
CB A:GLU95 4.8 11.3 0.6
CD2 A:LEU98 4.9 15.1 1.0

Magnesium binding site 4 out of 4 in 6wqy

Go back to Magnesium Binding Sites List in 6wqy
Magnesium binding site 4 out of 4 in the GH5-4 Broad Specificity Endoglucanase From Bacteroides Salanitronis


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of GH5-4 Broad Specificity Endoglucanase From Bacteroides Salanitronis within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg404

b:40.1
occ:1.00
O A:HOH763 2.0 44.5 1.0
O A:HOH667 2.2 15.5 1.0
OD2 A:ASP131 3.8 16.2 1.0
O A:HOH862 3.9 30.2 1.0
O A:HOH628 4.1 38.0 1.0
HA A:GLN127 4.2 13.9 1.0
OD2 A:ASP134 4.3 15.6 0.6
O A:GLN127 4.3 13.4 1.0
O A:SER126 4.4 11.0 0.3
O A:SER126 4.4 11.6 0.7
CG A:ASP131 4.5 12.7 1.0
O A:HOH967 4.6 23.9 1.0
C A:GLN127 4.7 11.6 1.0
O A:TYR128 4.7 12.7 1.0
HB2 A:ASP131 4.7 15.8 1.0
CA A:GLN127 4.9 11.6 1.0

Reference:

C.A.Bingman, R.W.Smith, C.M.Bianchetti, T.E.Takasuka, B.G.Fox. Structural Perspectives on Multifunctional GH5 Cellulases To Be Published.
Page generated: Tue Oct 1 23:10:23 2024

Last articles

Zn in 1C1W
Zn in 1C2D
Zn in 1C2E
Zn in 1BYF
Zn in 1BY4
Zn in 1C1V
Zn in 1C1U
Zn in 1BZS
Zn in 1C1R
Zn in 1C1N
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy