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Magnesium in PDB 6wr9: Self-Assembly of A 3D Dna Crystal Lattice (4X5 Duplex Version) Containing the J32 Immobile Holliday Junction

Protein crystallography data

The structure of Self-Assembly of A 3D Dna Crystal Lattice (4X5 Duplex Version) Containing the J32 Immobile Holliday Junction, PDB code: 6wr9 was solved by C.R.Simmons, T.Macculloch, N.Stephanopoulos, H.Yan, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 34.49 / 3.07
Space group P 32
Cell size a, b, c (Å), α, β, γ (°) 68.988, 68.988, 60.793, 90, 90, 120
R / Rfree (%) 22.3 / 24.6

Other elements in 6wr9:

The structure of Self-Assembly of A 3D Dna Crystal Lattice (4X5 Duplex Version) Containing the J32 Immobile Holliday Junction also contains other interesting chemical elements:

Arsenic (As) 2 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Self-Assembly of A 3D Dna Crystal Lattice (4X5 Duplex Version) Containing the J32 Immobile Holliday Junction (pdb code 6wr9). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Self-Assembly of A 3D Dna Crystal Lattice (4X5 Duplex Version) Containing the J32 Immobile Holliday Junction, PDB code: 6wr9:

Magnesium binding site 1 out of 1 in 6wr9

Go back to Magnesium Binding Sites List in 6wr9
Magnesium binding site 1 out of 1 in the Self-Assembly of A 3D Dna Crystal Lattice (4X5 Duplex Version) Containing the J32 Immobile Holliday Junction


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Self-Assembly of A 3D Dna Crystal Lattice (4X5 Duplex Version) Containing the J32 Immobile Holliday Junction within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg101

b:103.4
occ:1.00
N7 B:DG2 3.9 73.9 1.0
O6 B:DG2 4.5 77.6 1.0
O4 B:DT3 4.7 85.5 1.0
C5 B:DG2 4.7 74.8 1.0
C8 B:DG2 4.7 76.5 1.0
OP2 B:DT1 4.8 70.2 1.0
C6 B:DG2 4.9 77.3 1.0

Reference:

C.R.Simmons, T.Macculloch, N.Stephanopoulos, H.Yan. Structural and Computational Based Approach For the Creation of A Toolbox of Immobile Holliday Junctions For Dna-Directed Self-Assembly To Be Published.
Page generated: Sat Aug 21 15:12:00 2021

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