Magnesium in PDB 6wrf: Clpx-Clpp Complex Bound to Gfp-Ssra, Recognition Complex

Enzymatic activity of Clpx-Clpp Complex Bound to Gfp-Ssra, Recognition Complex

All present enzymatic activity of Clpx-Clpp Complex Bound to Gfp-Ssra, Recognition Complex:
3.4.21.92;

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Clpx-Clpp Complex Bound to Gfp-Ssra, Recognition Complex (pdb code 6wrf). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 5 binding sites of Magnesium where determined in the Clpx-Clpp Complex Bound to Gfp-Ssra, Recognition Complex, PDB code: 6wrf:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5;

Magnesium binding site 1 out of 5 in 6wrf

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Magnesium binding site 1 out of 5 in the Clpx-Clpp Complex Bound to Gfp-Ssra, Recognition Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Clpx-Clpp Complex Bound to Gfp-Ssra, Recognition Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg502

b:30.0
occ:1.00
HG1 B:THR126 1.6 33.8 1.0
OG1 B:THR126 2.0 33.8 1.0
O2G B:AGS501 2.0 32.0 1.0
O2B B:AGS501 2.0 32.0 1.0
OD2 B:ASP184 3.0 28.2 1.0
PG B:AGS501 3.1 32.0 1.0
S1G B:AGS501 3.4 32.0 1.0
PB B:AGS501 3.4 32.0 1.0
CB B:THR126 3.4 33.8 1.0
OD1 B:ASP184 3.4 28.2 1.0
H B:THR126 3.5 33.8 1.0
CG B:ASP184 3.6 28.2 1.0
HB B:THR126 3.7 33.8 1.0
O3B B:AGS501 3.7 32.0 1.0
HE2 B:LYS125 3.8 26.4 1.0
HH22 C:ARG307 3.8 27.9 1.0
HG21 B:THR126 3.9 33.8 1.0
HB2 B:LYS125 4.0 26.4 1.0
O1B B:AGS501 4.1 32.0 1.0
HH B:TYR182 4.1 27.3 1.0
CG2 B:THR126 4.1 33.8 1.0
N B:THR126 4.1 33.8 1.0
OE2 B:GLU185 4.1 30.3 1.0
O1A B:AGS501 4.2 32.0 1.0
HG23 B:THR126 4.3 33.8 1.0
CA B:THR126 4.3 33.8 1.0
O3G B:AGS501 4.4 32.0 1.0
O3A B:AGS501 4.5 32.0 1.0
HA B:THR126 4.5 33.8 1.0
HH12 C:ARG307 4.5 27.9 1.0
OE1 C:GLU216 4.6 30.7 1.0
OH B:TYR182 4.6 27.3 1.0
NH2 C:ARG307 4.7 27.9 1.0
HH11 B:ARG370 4.7 30.4 1.0
CE B:LYS125 4.7 26.4 1.0
HD3 C:LYS213 4.7 31.4 1.0
HZ3 B:LYS125 4.7 26.4 1.0
HZ1 B:LYS125 4.8 26.4 1.0
PA B:AGS501 4.8 32.0 1.0
CD B:GLU185 5.0 30.3 1.0
CB B:LYS125 5.0 26.4 1.0
HD2 C:LYS213 5.0 31.4 1.0
HH12 B:ARG370 5.0 30.4 1.0
NZ B:LYS125 5.0 26.4 1.0

Magnesium binding site 2 out of 5 in 6wrf

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Magnesium binding site 2 out of 5 in the Clpx-Clpp Complex Bound to Gfp-Ssra, Recognition Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Clpx-Clpp Complex Bound to Gfp-Ssra, Recognition Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg502

b:30.0
occ:1.00
HG1 C:THR126 1.6 39.9 1.0
OG1 C:THR126 2.0 39.9 1.0
O2G C:AGS501 2.0 47.0 1.0
O2B C:AGS501 2.4 47.0 1.0
OD2 C:ASP184 2.4 27.9 1.0
CG C:ASP184 3.2 27.9 1.0
OD1 C:ASP184 3.2 27.9 1.0
CB C:THR126 3.4 39.9 1.0
PG C:AGS501 3.5 47.0 1.0
H C:THR126 3.7 39.9 1.0
HG21 C:THR126 3.7 39.9 1.0
HB C:THR126 3.7 39.9 1.0
PB C:AGS501 3.8 47.0 1.0
CG2 C:THR126 4.0 39.9 1.0
OE2 C:GLU185 4.0 28.8 1.0
O3B C:AGS501 4.1 47.0 1.0
HG23 C:THR126 4.1 39.9 1.0
HE2 C:LYS125 4.1 26.9 1.0
HH12 D:ARG307 4.2 28.9 1.0
HB2 C:LYS125 4.2 26.9 1.0
N C:THR126 4.3 39.9 1.0
HH C:TYR182 4.3 26.3 1.0
CA C:THR126 4.3 39.9 1.0
HH22 D:ARG307 4.4 28.9 1.0
S1G C:AGS501 4.4 47.0 1.0
HZ2 D:LYS213 4.4 31.3 1.0
O3G C:AGS501 4.5 47.0 1.0
HA C:THR126 4.5 39.9 1.0
HZ3 D:LYS213 4.6 31.3 1.0
CB C:ASP184 4.6 27.9 1.0
O1A C:AGS501 4.6 47.0 1.0
O1B C:AGS501 4.7 47.0 1.0
HG2 C:GLU185 4.7 28.8 1.0
CD C:GLU185 4.7 28.8 1.0
O3A C:AGS501 4.7 47.0 1.0
OH C:TYR182 4.8 26.3 1.0
HE2 C:TYR182 4.8 26.3 1.0
HH12 C:ARG370 4.8 32.0 1.0
H C:GLU185 4.8 28.8 1.0
HB3 C:ASP184 4.8 27.9 1.0
HG22 C:THR126 4.9 39.9 1.0
NZ D:LYS213 4.9 31.3 1.0
HB2 C:ASP184 4.9 27.9 1.0
NH1 D:ARG307 5.0 28.9 1.0

Magnesium binding site 3 out of 5 in 6wrf

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Magnesium binding site 3 out of 5 in the Clpx-Clpp Complex Bound to Gfp-Ssra, Recognition Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Clpx-Clpp Complex Bound to Gfp-Ssra, Recognition Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg502

b:30.0
occ:1.00
HG1 D:THR126 1.6 34.6 1.0
OG1 D:THR126 2.0 34.6 1.0
O2G D:AGS501 2.0 47.0 1.0
O2B D:AGS501 2.5 47.0 1.0
OD2 D:ASP184 2.6 29.5 1.0
OD1 D:ASP184 3.2 29.5 1.0
CG D:ASP184 3.3 29.5 1.0
CB D:THR126 3.4 34.6 1.0
PG D:AGS501 3.5 47.0 1.0
HG21 D:THR126 3.7 34.6 1.0
H D:THR126 3.8 34.6 1.0
HB D:THR126 3.8 34.6 1.0
PB D:AGS501 3.9 47.0 1.0
OE2 D:GLU185 3.9 30.6 1.0
CG2 D:THR126 4.0 34.6 1.0
HG23 D:THR126 4.0 34.6 1.0
OE1 E:GLU216 4.1 34.8 1.0
HE2 D:LYS125 4.2 28.9 1.0
O3B D:AGS501 4.2 47.0 1.0
HH22 E:ARG307 4.3 30.7 1.0
HD3 E:LYS213 4.3 32.9 1.0
HB2 D:LYS125 4.3 28.9 1.0
N D:THR126 4.3 34.6 1.0
CA D:THR126 4.3 34.6 1.0
HH21 E:ARG307 4.4 30.7 1.0
OE2 E:GLU216 4.4 34.8 1.0
O3G D:AGS501 4.5 47.0 1.0
S1G D:AGS501 4.5 47.0 1.0
HA D:THR126 4.5 34.6 1.0
O1A D:AGS501 4.5 47.0 1.0
O1B D:AGS501 4.6 47.0 1.0
NH2 E:ARG307 4.6 30.7 1.0
CD D:GLU185 4.6 30.6 1.0
OH D:TYR182 4.6 24.8 1.0
CD E:GLU216 4.7 34.8 1.0
HH12 D:ARG370 4.7 26.7 1.0
CB D:ASP184 4.7 29.5 1.0
H D:GLU185 4.7 30.6 1.0
HG2 D:GLU185 4.9 30.6 1.0
HG22 D:THR126 4.9 34.6 1.0
O3A D:AGS501 4.9 47.0 1.0
HE2 D:TYR182 5.0 24.8 1.0
HB3 D:ASP184 5.0 29.5 1.0
HH D:TYR182 5.0 24.8 1.0
HZ3 D:LYS125 5.0 28.9 1.0

Magnesium binding site 4 out of 5 in 6wrf

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Magnesium binding site 4 out of 5 in the Clpx-Clpp Complex Bound to Gfp-Ssra, Recognition Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Clpx-Clpp Complex Bound to Gfp-Ssra, Recognition Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Mg502

b:30.0
occ:1.00
O2G E:AGS501 2.0 46.9 1.0
OD2 E:ASP184 2.0 38.9 1.0
OD1 E:ASP184 2.1 38.9 1.0
CG E:ASP184 2.3 38.9 1.0
HG1 E:THR126 2.7 37.7 1.0
OG1 E:THR126 3.1 37.7 1.0
PG E:AGS501 3.3 46.9 1.0
O2B E:AGS501 3.3 46.9 1.0
HE2 E:LYS125 3.3 36.6 1.0
HH E:TYR182 3.4 33.2 1.0
S1G E:AGS501 3.6 46.9 1.0
H E:GLU185 3.8 42.4 1.0
CB E:ASP184 3.9 38.9 1.0
OH E:TYR182 4.1 33.2 1.0
HB2 E:LYS125 4.1 36.6 1.0
O3B E:AGS501 4.1 46.9 1.0
HG2 E:GLU185 4.2 42.4 1.0
HB2 E:ASP184 4.2 38.9 1.0
CE E:LYS125 4.2 36.6 1.0
HE2 E:TYR182 4.2 33.2 1.0
H E:THR126 4.3 37.7 1.0
HB3 E:ASP184 4.3 38.9 1.0
OE1 E:GLU185 4.3 42.4 1.0
PB E:AGS501 4.3 46.9 1.0
O3G E:AGS501 4.4 46.9 1.0
HA E:ASP184 4.4 38.9 1.0
CD E:GLU185 4.5 42.4 1.0
CB E:THR126 4.5 37.7 1.0
N E:GLU185 4.5 42.4 1.0
HE3 E:LYS125 4.5 36.6 1.0
HZ3 E:LYS125 4.6 36.6 1.0
HB3 E:LYS125 4.7 36.6 1.0
CA E:ASP184 4.7 38.9 1.0
HZ2 E:LYS125 4.8 36.6 1.0
N E:THR126 4.8 37.7 1.0
HB E:THR126 4.8 37.7 1.0
NZ E:LYS125 4.8 36.6 1.0
O E:GLY248 4.8 31.3 1.0
CG E:GLU185 4.8 42.4 1.0
CB E:LYS125 4.8 36.6 1.0
OE2 E:GLU185 4.9 42.4 1.0
O1B E:AGS501 5.0 46.9 1.0
CE2 E:TYR182 5.0 33.2 1.0

Magnesium binding site 5 out of 5 in 6wrf

Go back to Magnesium Binding Sites List in 6wrf
Magnesium binding site 5 out of 5 in the Clpx-Clpp Complex Bound to Gfp-Ssra, Recognition Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Clpx-Clpp Complex Bound to Gfp-Ssra, Recognition Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg502

b:30.0
occ:1.00
OD2 A:ASP184 2.0 44.6 1.0
HG1 A:THR126 2.0 42.1 1.0
OG1 A:THR126 2.0 42.1 1.0
OD1 A:ASP184 2.3 44.6 1.0
S1G A:AGS501 2.4 43.7 1.0
CG A:ASP184 2.4 44.6 1.0
O2B A:AGS501 3.3 43.7 1.0
CB A:THR126 3.4 42.1 1.0
OH A:TYR182 3.5 48.0 1.0
HH A:TYR182 3.7 48.0 1.0
H A:THR126 3.7 42.1 1.0
HG21 A:THR126 3.7 42.1 1.0
OE2 A:GLU185 3.8 42.2 1.0
HE2 A:LYS125 3.9 38.2 1.0
CG2 A:THR126 3.9 42.1 1.0
CB A:ASP184 3.9 44.6 1.0
HG23 A:THR126 3.9 42.1 1.0
HB A:THR126 4.0 42.1 1.0
N A:THR126 4.0 42.1 1.0
HB2 A:LYS125 4.0 38.2 1.0
HA A:THR126 4.1 42.1 1.0
CA A:THR126 4.1 42.1 1.0
HB3 A:LYS125 4.2 38.2 1.0
PG A:AGS501 4.2 43.7 1.0
HB2 A:ASP184 4.3 44.6 1.0
HB3 A:ASP184 4.3 44.6 1.0
H A:GLU185 4.3 42.2 1.0
CD A:GLU185 4.3 42.2 1.0
PB A:AGS501 4.5 43.7 1.0
HG2 A:GLU185 4.5 42.2 1.0
HE2 A:TYR182 4.5 48.0 1.0
CB A:LYS125 4.6 38.2 1.0
HA A:ASP184 4.6 44.6 1.0
O1B A:AGS501 4.6 43.7 1.0
CZ A:TYR182 4.7 48.0 1.0
HA2 A:GLY249 4.7 42.5 1.0
O3G A:AGS501 4.8 43.7 1.0
OE1 A:GLU185 4.8 42.2 1.0
CE A:LYS125 4.9 38.2 1.0
CA A:ASP184 4.9 44.6 1.0
HG22 A:THR126 4.9 42.1 1.0
C A:LYS125 4.9 38.2 1.0
O3B A:AGS501 4.9 43.7 1.0
N A:GLU185 4.9 42.2 1.0

Reference:

X.Fei, T.A.Bell, S.R.Barkow, T.A.Baker, R.T.Sauer. Structural Basis of Clpxp Recognition and Unfolding of Ssra-Tagged Substrates. Elife V. 9 2020.
ISSN: ESSN 2050-084X
PubMed: 33089779
DOI: 10.7554/ELIFE.61496
Page generated: Tue Dec 15 01:37:29 2020

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