Atomistry » Magnesium » PDB 6wph-6wwk » 6wsg
Atomistry »
  Magnesium »
    PDB 6wph-6wwk »
      6wsg »

Magnesium in PDB 6wsg: Clpx-Clpp Complex Bound to Ssra-Tagged Gfp, Intermediate Complex

Enzymatic activity of Clpx-Clpp Complex Bound to Ssra-Tagged Gfp, Intermediate Complex

All present enzymatic activity of Clpx-Clpp Complex Bound to Ssra-Tagged Gfp, Intermediate Complex:
3.4.21.92;

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Clpx-Clpp Complex Bound to Ssra-Tagged Gfp, Intermediate Complex (pdb code 6wsg). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 4 binding sites of Magnesium where determined in the Clpx-Clpp Complex Bound to Ssra-Tagged Gfp, Intermediate Complex, PDB code: 6wsg:
Jump to Magnesium binding site number: 1; 2; 3; 4;

Magnesium binding site 1 out of 4 in 6wsg

Go back to Magnesium Binding Sites List in 6wsg
Magnesium binding site 1 out of 4 in the Clpx-Clpp Complex Bound to Ssra-Tagged Gfp, Intermediate Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Clpx-Clpp Complex Bound to Ssra-Tagged Gfp, Intermediate Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg502

b:30.0
occ:1.00
HG1 B:THR126 1.6 54.9 1.0
O2G B:AGS501 2.0 52.0 1.0
OG1 B:THR126 2.0 54.9 1.0
O2B B:AGS501 2.5 52.0 1.0
OD2 B:ASP184 2.7 56.1 1.0
HZ1 C:LYS213 2.9 50.8 1.0
OD1 B:ASP184 3.1 56.1 1.0
CG B:ASP184 3.2 56.1 1.0
CB B:THR126 3.4 54.9 1.0
PG B:AGS501 3.4 52.0 1.0
HZ2 C:LYS213 3.5 50.8 1.0
H B:THR126 3.6 54.9 1.0
NZ C:LYS213 3.6 50.8 1.0
HB B:THR126 3.7 54.9 1.0
PB B:AGS501 3.8 52.0 1.0
HE2 B:LYS125 3.9 48.9 1.0
HG21 B:THR126 3.9 54.9 1.0
OE2 B:GLU185 4.0 55.0 1.0
O1A B:AGS501 4.0 52.0 1.0
HB2 B:LYS125 4.1 48.9 1.0
HZ3 C:LYS213 4.1 50.8 1.0
S1G B:AGS501 4.1 52.0 1.0
CG2 B:THR126 4.1 54.9 1.0
O3B B:AGS501 4.1 52.0 1.0
N B:THR126 4.2 54.9 1.0
HH B:TYR182 4.2 59.3 1.0
HG23 B:THR126 4.2 54.9 1.0
CA B:THR126 4.3 54.9 1.0
O1B B:AGS501 4.5 52.0 1.0
HH22 C:ARG307 4.5 43.9 1.0
O3G B:AGS501 4.5 52.0 1.0
HA B:THR126 4.5 54.9 1.0
HE3 C:LYS213 4.6 50.8 1.0
CB B:ASP184 4.6 56.1 1.0
HH21 C:ARG307 4.7 43.9 1.0
CD B:GLU185 4.7 55.0 1.0
HB3 B:ASP184 4.7 56.1 1.0
CE C:LYS213 4.7 50.8 1.0
OH B:TYR182 4.8 59.3 1.0
CE B:LYS125 4.8 48.9 1.0
OE1 C:GLU216 4.8 48.1 1.0
NH2 C:ARG307 4.9 43.9 1.0
PA B:AGS501 4.9 52.0 1.0
O3A B:AGS501 4.9 52.0 1.0
H B:GLU185 4.9 55.0 1.0
HE2 B:TYR182 4.9 59.3 1.0
HE3 B:LYS125 5.0 48.9 1.0
CB B:LYS125 5.0 48.9 1.0

Magnesium binding site 2 out of 4 in 6wsg

Go back to Magnesium Binding Sites List in 6wsg
Magnesium binding site 2 out of 4 in the Clpx-Clpp Complex Bound to Ssra-Tagged Gfp, Intermediate Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Clpx-Clpp Complex Bound to Ssra-Tagged Gfp, Intermediate Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg502

b:30.0
occ:1.00
HG1 C:THR126 1.6 38.4 1.0
O2G C:AGS501 2.0 38.5 1.0
OG1 C:THR126 2.1 38.4 1.0
O2B C:AGS501 2.5 38.5 1.0
OD2 C:ASP184 2.5 40.9 1.0
CB C:THR126 3.2 38.4 1.0
HB C:THR126 3.3 38.4 1.0
PG C:AGS501 3.4 38.5 1.0
CG C:ASP184 3.4 40.9 1.0
HG21 C:THR126 3.6 38.4 1.0
OD1 C:ASP184 3.6 40.9 1.0
O3G C:AGS501 3.7 38.5 1.0
OE2 C:GLU185 3.8 42.1 1.0
PB C:AGS501 3.9 38.5 1.0
H C:THR126 3.9 38.4 1.0
CG2 C:THR126 4.0 38.4 1.0
OE1 D:GLU216 4.0 41.5 1.0
HD3 D:LYS213 4.1 42.4 1.0
HH21 D:ARG307 4.1 36.2 1.0
HH22 D:ARG307 4.1 36.2 1.0
O3B C:AGS501 4.1 38.5 1.0
O1A C:AGS501 4.2 38.5 1.0
HZ3 D:LYS213 4.3 42.4 1.0
NH2 D:ARG307 4.4 36.2 1.0
CA C:THR126 4.4 38.4 1.0
N C:THR126 4.5 38.4 1.0
HZ2 D:LYS213 4.6 42.4 1.0
HG23 C:THR126 4.6 38.4 1.0
HD2 D:LYS213 4.6 42.4 1.0
HA C:THR126 4.6 38.4 1.0
HG22 C:THR126 4.6 38.4 1.0
CD C:GLU185 4.7 42.1 1.0
HB2 C:LYS125 4.7 35.6 1.0
OE2 D:GLU216 4.7 41.5 1.0
CB C:ASP184 4.7 40.9 1.0
O1B C:AGS501 4.7 38.5 1.0
HE2 C:LYS125 4.8 35.6 1.0
CD D:GLU216 4.8 41.5 1.0
O3A C:AGS501 4.8 38.5 1.0
CD D:LYS213 4.8 42.4 1.0
HB3 C:ASP184 4.8 40.9 1.0
S1G C:AGS501 4.8 38.5 1.0
OH C:TYR182 4.9 39.3 1.0
NZ D:LYS213 4.9 42.4 1.0
HH22 C:ARG370 4.9 40.9 1.0
HG2 C:GLU185 5.0 42.1 1.0

Magnesium binding site 3 out of 4 in 6wsg

Go back to Magnesium Binding Sites List in 6wsg
Magnesium binding site 3 out of 4 in the Clpx-Clpp Complex Bound to Ssra-Tagged Gfp, Intermediate Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Clpx-Clpp Complex Bound to Ssra-Tagged Gfp, Intermediate Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg502

b:30.0
occ:1.00
HG1 D:THR126 1.6 44.5 1.0
O3G D:AGS501 2.0 59.6 1.0
OG1 D:THR126 2.0 44.5 1.0
O2B D:AGS501 2.2 59.6 1.0
OD2 D:ASP184 2.7 38.9 1.0
OD1 D:ASP184 3.2 38.9 1.0
CG D:ASP184 3.3 38.9 1.0
CB D:THR126 3.4 44.5 1.0
PG D:AGS501 3.5 59.6 1.0
PB D:AGS501 3.6 59.6 1.0
HB D:THR126 3.7 44.5 1.0
H D:THR126 3.7 44.5 1.0
HG21 D:THR126 3.8 44.5 1.0
OE2 D:GLU185 3.9 40.7 1.0
HE2 D:LYS125 4.0 43.1 1.0
O3B D:AGS501 4.1 59.6 1.0
CG2 D:THR126 4.1 44.5 1.0
HB2 D:LYS125 4.2 43.1 1.0
N D:THR126 4.2 44.5 1.0
O1A D:AGS501 4.3 59.6 1.0
OE1 E:GLU216 4.3 44.3 1.0
O1B D:AGS501 4.3 59.6 1.0
CA D:THR126 4.3 44.5 1.0
HG23 D:THR126 4.4 44.5 1.0
HH22 E:ARG307 4.4 43.3 1.0
O2G D:AGS501 4.4 59.6 1.0
S1G D:AGS501 4.5 59.6 1.0
CD D:GLU185 4.5 40.7 1.0
HA D:THR126 4.5 44.5 1.0
HH21 E:ARG307 4.6 43.3 1.0
O3A D:AGS501 4.7 59.6 1.0
OH D:TYR182 4.7 36.1 1.0
HH12 D:ARG370 4.7 44.8 1.0
NH2 E:ARG307 4.8 43.3 1.0
CB D:ASP184 4.8 38.9 1.0
OE2 E:GLU216 4.8 44.3 1.0
H D:GLU185 4.8 40.7 1.0
HG2 D:GLU185 4.8 40.7 1.0
PA D:AGS501 4.9 59.6 1.0
HG22 D:THR126 4.9 44.5 1.0
OE1 D:GLU185 4.9 40.7 1.0
HB3 D:ASP184 4.9 38.9 1.0
HH D:TYR182 5.0 36.1 1.0
CE D:LYS125 5.0 43.1 1.0
CD E:GLU216 5.0 44.3 1.0

Magnesium binding site 4 out of 4 in 6wsg

Go back to Magnesium Binding Sites List in 6wsg
Magnesium binding site 4 out of 4 in the Clpx-Clpp Complex Bound to Ssra-Tagged Gfp, Intermediate Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Clpx-Clpp Complex Bound to Ssra-Tagged Gfp, Intermediate Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Mg502

b:30.0
occ:1.00
HG1 E:THR126 1.6 40.5 1.0
O2G E:AGS501 2.0 46.4 1.0
OG1 E:THR126 2.0 40.5 1.0
O2B E:AGS501 2.1 46.4 1.0
OD2 E:ASP184 3.0 42.8 1.0
CB E:THR126 3.2 40.5 1.0
HB E:THR126 3.2 40.5 1.0
PG E:AGS501 3.5 46.4 1.0
H E:THR126 3.6 40.5 1.0
PB E:AGS501 3.6 46.4 1.0
HG21 E:THR126 3.8 40.5 1.0
CG E:ASP184 3.8 42.8 1.0
OD1 E:ASP184 3.9 42.8 1.0
O1A E:AGS501 3.9 46.4 1.0
OE1 F:GLU216 3.9 49.2 1.0
O3G E:AGS501 4.0 46.4 1.0
O3B E:AGS501 4.1 46.4 1.0
HH22 F:ARG307 4.1 47.2 1.0
CG2 E:THR126 4.1 40.5 1.0
N E:THR126 4.2 40.5 1.0
CA E:THR126 4.2 40.5 1.0
OE2 E:GLU185 4.4 45.3 1.0
HB2 E:LYS125 4.4 38.6 1.0
O1B E:AGS501 4.4 46.4 1.0
HH21 F:ARG307 4.4 47.2 1.0
HE2 F:LYS213 4.5 47.9 1.0
HH21 E:ARG370 4.5 46.2 1.0
NH2 F:ARG307 4.5 47.2 1.0
OE2 F:GLU216 4.5 49.2 1.0
O3A E:AGS501 4.5 46.4 1.0
HE2 E:LYS125 4.5 38.6 1.0
HA E:THR126 4.5 40.5 1.0
HH22 E:ARG370 4.5 46.2 1.0
CD F:GLU216 4.7 49.2 1.0
PA E:AGS501 4.7 46.4 1.0
HG23 E:THR126 4.7 40.5 1.0
HG22 E:THR126 4.7 40.5 1.0
S1G E:AGS501 4.8 46.4 1.0
NH2 E:ARG370 4.9 46.2 1.0
OH E:TYR182 5.0 44.0 1.0

Reference:

X.Fei, T.A.Bell, S.R.Barkow, T.A.Baker, R.T.Sauer. Structural Basis of Clpxp Recognition and Unfolding of Ssra-Tagged Substrates. Elife V. 9 2020.
ISSN: ESSN 2050-084X
PubMed: 33089779
DOI: 10.7554/ELIFE.61496
Page generated: Tue Oct 1 23:11:45 2024

Last articles

Zn in 1DU3
Zn in 1DTH
Zn in 1DTD
Zn in 1DSV
Zn in 1DSW
Zn in 1DSQ
Zn in 1DOS
Zn in 1DPM
Zn in 1DO5
Zn in 1DQS
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy