Magnesium in PDB 6wsh: Crystal Structure of Eutv From Enterococcus Faecalis
Protein crystallography data
The structure of Crystal Structure of Eutv From Enterococcus Faecalis, PDB code: 6wsh
was solved by
S.F.Ataide,
J.L.Walshe,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
42.84 /
2.12
|
Space group
|
P 21 21 21
|
Cell size a, b, c (Å), α, β, γ (°)
|
54.539,
85.688,
97.456,
90,
90,
90
|
R / Rfree (%)
|
23.9 /
24.1
|
Other elements in 6wsh:
The structure of Crystal Structure of Eutv From Enterococcus Faecalis also contains other interesting chemical elements:
Magnesium Binding Sites:
The binding sites of Magnesium atom in the Crystal Structure of Eutv From Enterococcus Faecalis
(pdb code 6wsh). This binding sites where shown within
5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the
Crystal Structure of Eutv From Enterococcus Faecalis, PDB code: 6wsh:
Jump to Magnesium binding site number:
1;
2;
Magnesium binding site 1 out
of 2 in 6wsh
Go back to
Magnesium Binding Sites List in 6wsh
Magnesium binding site 1 out
of 2 in the Crystal Structure of Eutv From Enterococcus Faecalis
 Mono view
 Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 1 of Crystal Structure of Eutv From Enterococcus Faecalis within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg201
b:30.7
occ:1.00
|
H2
|
A:HOH306
|
2.1
|
38.5
|
1.0
|
OD2
|
A:ASP10
|
2.1
|
44.5
|
1.0
|
O
|
A:GLN56
|
2.2
|
29.1
|
1.0
|
OD2
|
A:ASP54
|
2.3
|
45.4
|
1.0
|
O
|
A:HOH306
|
2.4
|
38.5
|
1.0
|
H1
|
A:HOH306
|
2.8
|
38.5
|
1.0
|
CG
|
A:ASP10
|
3.1
|
38.0
|
1.0
|
CG
|
A:ASP54
|
3.1
|
31.0
|
1.0
|
C
|
A:GLN56
|
3.4
|
32.4
|
1.0
|
OD1
|
A:ASP10
|
3.5
|
54.8
|
1.0
|
HB2
|
A:GLN56
|
3.5
|
39.8
|
1.0
|
H
|
A:ASP10
|
3.6
|
29.9
|
1.0
|
HG2
|
A:MET57
|
3.8
|
29.2
|
1.0
|
HB3
|
A:GLN56
|
3.8
|
39.8
|
1.0
|
HB3
|
A:ASP54
|
3.8
|
32.1
|
1.0
|
OD1
|
A:ASP54
|
3.8
|
30.6
|
1.0
|
HZ1
|
A:LYS104
|
3.9
|
44.1
|
1.0
|
OD1
|
A:ASP9
|
3.9
|
36.8
|
1.0
|
HA
|
A:MET57
|
3.9
|
32.9
|
1.0
|
CB
|
A:GLN56
|
4.0
|
33.2
|
1.0
|
CB
|
A:ASP54
|
4.0
|
26.7
|
1.0
|
CA
|
A:GLN56
|
4.2
|
20.7
|
1.0
|
HG3
|
A:MET57
|
4.2
|
29.2
|
1.0
|
HB2
|
A:ASP54
|
4.3
|
32.1
|
1.0
|
N
|
A:MET57
|
4.4
|
19.3
|
1.0
|
CB
|
A:ASP10
|
4.4
|
27.2
|
1.0
|
H
|
A:GLN56
|
4.4
|
32.7
|
1.0
|
CG
|
A:MET57
|
4.4
|
24.3
|
1.0
|
HZ3
|
A:LYS104
|
4.5
|
44.1
|
1.0
|
N
|
A:ASP10
|
4.5
|
25.0
|
1.0
|
NZ
|
A:LYS104
|
4.5
|
36.8
|
1.0
|
HZ2
|
A:LYS104
|
4.5
|
44.1
|
1.0
|
HB3
|
A:ASP10
|
4.6
|
32.7
|
1.0
|
N
|
A:GLN56
|
4.6
|
27.2
|
1.0
|
CA
|
A:MET57
|
4.6
|
27.4
|
1.0
|
HG3
|
A:GLU11
|
4.6
|
44.9
|
1.0
|
H
|
A:GLU11
|
4.6
|
37.0
|
1.0
|
CG
|
A:ASP9
|
4.7
|
35.9
|
1.0
|
HA
|
A:ASP9
|
4.8
|
32.8
|
1.0
|
|
Magnesium binding site 2 out
of 2 in 6wsh
Go back to
Magnesium Binding Sites List in 6wsh
Magnesium binding site 2 out
of 2 in the Crystal Structure of Eutv From Enterococcus Faecalis
 Mono view
 Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 2 of Crystal Structure of Eutv From Enterococcus Faecalis within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mg202
b:35.9
occ:1.00
|
OD2
|
B:ASP10
|
2.2
|
42.7
|
1.0
|
O
|
B:HOH344
|
2.5
|
30.7
|
1.0
|
H1
|
B:HOH344
|
2.5
|
30.7
|
1.0
|
O
|
B:GLN56
|
2.6
|
33.5
|
1.0
|
OD2
|
B:ASP54
|
2.9
|
28.9
|
1.0
|
H2
|
B:HOH344
|
3.0
|
30.7
|
1.0
|
CG
|
B:ASP10
|
3.1
|
30.1
|
1.0
|
OD1
|
B:ASP10
|
3.4
|
25.4
|
1.0
|
CG
|
B:ASP54
|
3.6
|
27.1
|
1.0
|
C
|
B:GLN56
|
3.7
|
21.0
|
1.0
|
H1
|
B:HOH319
|
3.7
|
29.6
|
1.0
|
HB3
|
B:GLN56
|
3.8
|
26.8
|
1.0
|
HZ2
|
B:LYS104
|
3.9
|
41.1
|
1.0
|
HA
|
B:MET57
|
3.9
|
22.0
|
1.0
|
HB3
|
B:ASP54
|
4.0
|
18.2
|
1.0
|
HG2
|
B:MET57
|
4.0
|
23.5
|
1.0
|
H2
|
B:HOH319
|
4.0
|
29.6
|
1.0
|
H
|
B:ASP10
|
4.0
|
18.2
|
1.0
|
OD1
|
B:ASP9
|
4.3
|
34.5
|
1.0
|
O
|
B:HOH319
|
4.3
|
29.6
|
1.0
|
CB
|
B:ASP54
|
4.3
|
15.2
|
1.0
|
OD1
|
B:ASP54
|
4.3
|
16.4
|
1.0
|
HB2
|
B:ASP54
|
4.4
|
18.2
|
1.0
|
CB
|
B:GLN56
|
4.5
|
22.3
|
1.0
|
HB2
|
B:GLN56
|
4.5
|
26.8
|
1.0
|
CB
|
B:ASP10
|
4.5
|
15.3
|
1.0
|
HG3
|
B:MET57
|
4.5
|
23.5
|
1.0
|
HG3
|
B:GLU11
|
4.6
|
39.2
|
1.0
|
N
|
B:MET57
|
4.6
|
26.4
|
1.0
|
HB3
|
B:ASP10
|
4.6
|
18.4
|
1.0
|
H
|
B:GLN56
|
4.6
|
21.7
|
1.0
|
CA
|
B:GLN56
|
4.6
|
19.9
|
1.0
|
CA
|
B:MET57
|
4.6
|
18.3
|
1.0
|
HD3
|
B:PRO58
|
4.7
|
35.7
|
1.0
|
CG
|
B:MET57
|
4.7
|
19.6
|
1.0
|
NZ
|
B:LYS104
|
4.7
|
34.3
|
1.0
|
HZ3
|
B:LYS104
|
4.8
|
41.1
|
1.0
|
N
|
B:ASP10
|
4.8
|
15.2
|
1.0
|
OE2
|
B:GLU11
|
4.9
|
53.5
|
1.0
|
H
|
B:GLU11
|
5.0
|
19.7
|
1.0
|
HZ1
|
B:LYS104
|
5.0
|
41.1
|
1.0
|
|
Reference:
S.F.Ataide,
J.L.Walshe.
Structural Characterisation of the E. Faecalis Anti-Terminator Protein Eutv Bound to Rna To Be Published.
Page generated: Tue Oct 1 23:11:35 2024
|