Atomistry » Magnesium » PDB 6woc-6wvj » 6wud
Atomistry »
  Magnesium »
    PDB 6woc-6wvj »
      6wud »

Magnesium in PDB 6wud: Human Calcium and Integrin Binding Protein 3 Bound to TMC1 Residues 303-347

Protein crystallography data

The structure of Human Calcium and Integrin Binding Protein 3 Bound to TMC1 Residues 303-347, PDB code: 6wud was solved by L.Shapiro, G.Dionne, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 87.17 / 1.84
Space group P 32 2 1
Cell size a, b, c (Å), α, β, γ (°) 100.65, 100.65, 49.723, 90, 90, 120
R / Rfree (%) 16.4 / 18.8

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Human Calcium and Integrin Binding Protein 3 Bound to TMC1 Residues 303-347 (pdb code 6wud). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Human Calcium and Integrin Binding Protein 3 Bound to TMC1 Residues 303-347, PDB code: 6wud:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 6wud

Go back to Magnesium Binding Sites List in 6wud
Magnesium binding site 1 out of 2 in the Human Calcium and Integrin Binding Protein 3 Bound to TMC1 Residues 303-347


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Human Calcium and Integrin Binding Protein 3 Bound to TMC1 Residues 303-347 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg201

b:30.7
occ:1.00
OD1 A:ASN118 1.9 32.8 1.0
OD2 A:ASP127 2.0 31.1 1.0
O A:TYR122 2.0 31.9 1.0
OD1 A:ASP116 2.1 29.1 1.0
OD1 A:ASP120 2.1 35.9 1.0
O A:HOH328 2.1 34.2 1.0
CG A:ASN118 3.0 36.0 1.0
CG A:ASP127 3.0 32.1 1.0
CG A:ASP120 3.1 37.7 1.0
CG A:ASP116 3.1 32.7 1.0
H A:ASP120 3.2 41.4 1.0
C A:TYR122 3.2 31.3 1.0
HD21 A:ASN118 3.2 47.5 1.0
H A:TYR122 3.3 36.2 1.0
HA A:ILE123 3.4 33.1 1.0
OD1 A:ASP127 3.4 31.8 1.0
H A:ASN118 3.5 37.7 1.0
ND2 A:ASN118 3.5 39.5 1.0
OD2 A:ASP120 3.5 35.2 1.0
HA A:ASP116 3.6 33.4 1.0
HG A:CYS124 3.6 43.0 1.0
H A:CYS124 3.7 37.0 1.0
OD2 A:ASP116 3.9 31.1 1.0
HB2 A:TYR122 4.0 37.8 1.0
N A:ASP120 4.0 34.5 1.0
CB A:ASP116 4.0 27.3 1.0
N A:TYR122 4.0 30.1 1.0
H A:ASN119 4.1 40.9 1.0
N A:ILE123 4.1 31.7 1.0
CA A:ASP116 4.1 27.8 1.0
HB2 A:ASP116 4.1 32.9 1.0
CA A:TYR122 4.1 31.8 1.0
CA A:ILE123 4.1 27.5 1.0
N A:ASN118 4.2 31.4 1.0
CB A:ASP120 4.3 39.6 1.0
CB A:ASN118 4.3 38.0 1.0
CB A:ASP127 4.3 31.4 1.0
C A:ASP116 4.3 29.8 1.0
N A:ASN119 4.3 34.0 1.0
HD22 A:ASN118 4.3 47.5 1.0
HB2 A:ASP127 4.3 37.8 1.0
N A:CYS124 4.4 30.8 1.0
C A:ASN118 4.5 38.0 1.0
HB3 A:ASP120 4.5 47.5 1.0
CA A:ASN118 4.5 33.1 1.0
CB A:TYR122 4.5 31.4 1.0
H A:PHE117 4.6 32.8 1.0
CA A:ASP120 4.6 35.6 1.0
N A:PHE117 4.6 27.3 1.0
SG A:CYS124 4.6 35.8 1.0
H A:ASP121 4.6 43.7 1.0
HB3 A:ASP127 4.6 37.8 1.0
HG12 A:ILE123 4.7 31.6 1.0
O A:ASP116 4.8 32.0 1.0
N A:ASP121 4.8 36.4 1.0
HB3 A:TYR122 4.8 37.8 1.0
C A:ASP120 4.8 36.1 1.0
C A:ILE123 4.8 29.2 1.0
HB2 A:ASN118 4.8 45.6 1.0
HB3 A:CYS124 4.8 39.0 1.0
HB3 A:ASN118 4.8 45.6 1.0
HB3 A:ASP116 4.9 32.9 1.0
H A:ILE123 4.9 38.1 1.0
HG13 A:ILE123 5.0 31.6 1.0
HA A:TYR122 5.0 38.2 1.0

Magnesium binding site 2 out of 2 in 6wud

Go back to Magnesium Binding Sites List in 6wud
Magnesium binding site 2 out of 2 in the Human Calcium and Integrin Binding Protein 3 Bound to TMC1 Residues 303-347


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Human Calcium and Integrin Binding Protein 3 Bound to TMC1 Residues 303-347 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg202

b:37.3
occ:1.00
OD1 A:ASP157 1.9 41.5 1.0
OD2 A:ASP159 1.9 46.0 1.0
O A:HOH303 2.0 41.6 1.0
OD2 A:ASP168 2.2 37.5 1.0
O A:ARG163 2.2 37.9 1.0
OD1 A:ASP161 2.2 44.2 1.0
CG A:ASP161 3.0 46.4 1.0
CG A:ASP159 3.1 47.9 1.0
CG A:ASP157 3.1 44.0 1.0
H A:ASP161 3.1 60.2 1.0
CG A:ASP168 3.3 39.3 1.0
H A:ASP159 3.3 54.9 1.0
H A:ARG163 3.4 46.2 1.0
OD2 A:ASP161 3.4 46.8 1.0
H A:SER165 3.4 39.5 1.0
C A:ARG163 3.4 37.3 1.0
HA A:LEU164 3.6 35.1 1.0
HA A:ASP157 3.6 50.7 1.0
OD1 A:ASP159 3.6 48.4 1.0
OD2 A:ASP157 3.8 42.6 1.0
OD1 A:ASP168 3.9 41.1 1.0
H A:HIS160 3.9 58.1 1.0
N A:ASP161 4.0 50.1 1.0
N A:ASP159 4.0 45.7 1.0
CB A:ASP157 4.2 38.5 1.0
N A:ARG163 4.2 38.5 1.0
N A:SER165 4.2 32.9 1.0
CA A:ASP157 4.2 42.2 1.0
N A:HIS160 4.2 48.4 1.0
H A:GLY158 4.2 55.0 1.0
CB A:ASP161 4.2 47.8 1.0
HG2 A:ARG163 4.3 49.4 1.0
CA A:LEU164 4.3 29.2 1.0
CB A:ASP159 4.3 52.0 1.0
N A:LEU164 4.3 30.9 1.0
C A:ASP157 4.3 45.0 1.0
HG3 A:ARG163 4.4 49.4 1.0
N A:GLY158 4.4 45.7 1.0
C A:ASP159 4.4 46.6 1.0
HB3 A:ASP161 4.4 57.5 1.0
CA A:ASP159 4.4 53.8 1.0
CA A:ARG163 4.4 37.2 1.0
HB2 A:ASP157 4.4 46.2 1.0
HD23 A:LEU164 4.4 42.3 1.0
H A:GLY162 4.5 58.3 1.0
HB3 A:SER165 4.5 39.5 1.0
CB A:ASP168 4.5 34.7 1.0
CA A:ASP161 4.6 48.6 1.0
HB2 A:ASP168 4.6 41.7 1.0
HB2 A:ASP159 4.7 62.5 1.0
OG A:SER165 4.7 31.6 1.0
C A:LEU164 4.7 32.9 1.0
CG A:ARG163 4.7 41.1 1.0
HB3 A:ASP168 4.7 41.7 1.0
N A:GLY162 4.8 48.5 1.0
HG A:SER165 4.8 38.0 1.0
O A:ASP157 4.8 41.9 1.0
C A:ASP161 4.9 50.5 1.0
HA A:HIS160 5.0 61.7 1.0
C A:HIS160 5.0 49.0 1.0
HB3 A:ASP157 5.0 46.2 1.0
HB3 A:ASP159 5.0 62.5 1.0
CB A:SER165 5.0 32.9 1.0
CA A:HIS160 5.0 51.4 1.0

Reference:

X.Liang, X.Qiu, G.Dionne, C.Cunningham, M.L.Pucak, G.Peng, Y.Kim, A.Lauer, L.Shapiro, U.Mueller. CIB2 and CIB3 Are Auxiliary Subunits of the Mechanotransduction Channel of Hair Cells Neuron 2021.
ISSN: ISSN 0896-6273
DOI: 10.1016/J.NEURON.2021.05.007
Page generated: Sun Jul 11 14:59:16 2021

Last articles

Zn in 7VD8
Zn in 7V1R
Zn in 7V1Q
Zn in 7VPF
Zn in 7T85
Zn in 7T5F
Zn in 7NF9
Zn in 7M4M
Zn in 7M4O
Zn in 7M4N
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy