Magnesium in PDB 6wvj: Cryo-Em Structure of Bacillus Subtilis Rna Polymerase Elongation Complex

Enzymatic activity of Cryo-Em Structure of Bacillus Subtilis Rna Polymerase Elongation Complex

All present enzymatic activity of Cryo-Em Structure of Bacillus Subtilis Rna Polymerase Elongation Complex:
2.7.7.6;

Other elements in 6wvj:

The structure of Cryo-Em Structure of Bacillus Subtilis Rna Polymerase Elongation Complex also contains other interesting chemical elements:

Zinc (Zn) 2 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Cryo-Em Structure of Bacillus Subtilis Rna Polymerase Elongation Complex (pdb code 6wvj). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Cryo-Em Structure of Bacillus Subtilis Rna Polymerase Elongation Complex, PDB code: 6wvj:

Magnesium binding site 1 out of 1 in 6wvj

Go back to Magnesium Binding Sites List in 6wvj
Magnesium binding site 1 out of 1 in the Cryo-Em Structure of Bacillus Subtilis Rna Polymerase Elongation Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of Bacillus Subtilis Rna Polymerase Elongation Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg2001

b:60.2
occ:1.00
OD1 D:ASP453 2.1 55.0 1.0
OD1 D:ASP449 2.1 55.1 1.0
OD1 D:ASP451 2.1 57.5 1.0
O3' R:G16 2.4 68.5 1.0
OD2 D:ASP453 2.6 55.0 1.0
CG D:ASP453 2.7 55.0 1.0
CG D:ASP451 3.1 57.5 1.0
CG D:ASP449 3.2 55.1 1.0
OD2 D:ASP451 3.4 57.5 1.0
C3' R:G16 3.6 68.5 1.0
O D:ASP449 3.6 55.1 1.0
OD2 D:ASP449 3.6 55.1 1.0
O2' R:G16 3.6 68.5 1.0
C4' R:G16 4.0 68.5 1.0
CB D:ASP453 4.1 55.0 1.0
C2' R:G16 4.2 68.5 1.0
C D:ASP449 4.2 55.1 1.0
N D:ASP451 4.3 57.5 1.0
N D:ASP449 4.4 55.1 1.0
CB D:ASP449 4.4 55.1 1.0
CB D:ASP451 4.4 57.5 1.0
N D:ASP453 4.5 55.0 1.0
NH2 D:ARG414 4.6 52.0 1.0
CA D:ASP449 4.6 55.1 1.0
C5' R:G16 4.7 68.5 1.0
C D:ASP451 4.7 57.5 1.0
CA D:ASP451 4.7 57.5 1.0
CA D:ASP453 4.8 55.0 1.0
N D:GLY452 4.9 54.8 1.0

Reference:

T.P.Newing, A.J.Oakley, M.Miller, C.Dawson, S.Brown, J.Bouwer, G.Tolun, P.J.Lewis. Transcription Complex Recycling By the Atpase Motor Protein Held To Be Published.
Page generated: Tue Dec 15 01:38:09 2020

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