Magnesium in PDB 6wvr: Tubulin Dimers From A 13-Protofilament, Taxol Stabilized Microtubule

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Tubulin Dimers From A 13-Protofilament, Taxol Stabilized Microtubule (pdb code 6wvr). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Tubulin Dimers From A 13-Protofilament, Taxol Stabilized Microtubule, PDB code: 6wvr:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 6wvr

Go back to Magnesium Binding Sites List in 6wvr
Magnesium binding site 1 out of 2 in the Tubulin Dimers From A 13-Protofilament, Taxol Stabilized Microtubule


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Tubulin Dimers From A 13-Protofilament, Taxol Stabilized Microtubule within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg502

b:19.4
occ:1.00
O2B A:GTP501 2.0 18.9 1.0
O1G A:GTP501 2.0 19.4 1.0
O2G A:GTP501 2.2 19.6 1.0
PG A:GTP501 2.3 18.6 1.0
PB A:GTP501 2.7 19.1 1.0
O3B A:GTP501 2.8 17.3 1.0
HG1 A:THR145 3.3 0.0 1.0
H A:GLN11 3.4 0.0 1.0
O1B A:GTP501 3.4 20.5 1.0
HZ2 B:LYS254 3.5 0.0 1.0
HB A:THR145 3.6 0.0 1.0
O3G A:GTP501 3.7 20.2 1.0
HZ1 B:LYS254 3.9 0.0 1.0
HB2 A:GLN11 3.9 0.0 1.0
OD1 A:ASP69 3.9 0.0 1.0
OG1 A:THR145 4.0 0.0 1.0
H A:THR145 4.0 0.0 1.0
HA2 A:GLY10 4.1 0.0 1.0
NZ B:LYS254 4.1 0.0 1.0
HG2 A:GLU71 4.1 0.0 1.0
O3A A:GTP501 4.1 19.1 1.0
N A:GLN11 4.2 0.0 1.0
HZ3 B:LYS254 4.3 0.0 1.0
CB A:THR145 4.3 0.0 1.0
HB3 A:GLN11 4.4 0.0 1.0
HG3 A:GLU71 4.5 0.0 1.0
HA3 A:GLY10 4.5 0.0 1.0
H A:ALA99 4.5 0.0 1.0
CB A:GLN11 4.6 0.0 1.0
HB1 A:ALA99 4.6 0.0 1.0
CA A:GLY10 4.7 0.0 1.0
O1A A:GTP501 4.7 21.9 1.0
HD21 A:ASN101 4.7 0.0 1.0
PA A:GTP501 4.7 20.1 1.0
H A:GLY144 4.8 0.0 1.0
CG A:ASP69 4.8 0.0 1.0
CG A:GLU71 4.8 0.0 1.0
H A:GLY146 4.8 0.0 1.0
OD2 A:ASP69 4.8 0.0 1.0
OD1 A:ASP98 4.9 0.0 1.0
OE1 A:GLU71 4.9 0.0 1.0
N A:THR145 4.9 0.0 1.0
C A:GLY10 4.9 0.0 1.0
HD22 A:ASN101 4.9 0.0 1.0

Magnesium binding site 2 out of 2 in 6wvr

Go back to Magnesium Binding Sites List in 6wvr
Magnesium binding site 2 out of 2 in the Tubulin Dimers From A 13-Protofilament, Taxol Stabilized Microtubule


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Tubulin Dimers From A 13-Protofilament, Taxol Stabilized Microtubule within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg502

b:19.4
occ:1.00
O2B C:GTP501 2.0 18.9 1.0
O1G C:GTP501 2.0 19.4 1.0
O2G C:GTP501 2.2 19.6 1.0
PG C:GTP501 2.3 18.6 1.0
PB C:GTP501 2.7 19.1 1.0
O3B C:GTP501 2.8 17.3 1.0
HG1 C:THR145 3.3 0.0 1.0
H C:GLN11 3.4 0.0 1.0
O1B C:GTP501 3.4 20.5 1.0
HZ2 D:LYS254 3.5 0.0 1.0
HB C:THR145 3.6 0.0 1.0
O3G C:GTP501 3.7 20.2 1.0
HZ1 D:LYS254 3.9 0.0 1.0
HB2 C:GLN11 3.9 0.0 1.0
OD1 C:ASP69 3.9 0.0 1.0
OG1 C:THR145 4.0 0.0 1.0
H C:THR145 4.0 0.0 1.0
HA2 C:GLY10 4.1 0.0 1.0
NZ D:LYS254 4.1 0.0 1.0
HG2 C:GLU71 4.1 0.0 1.0
O3A C:GTP501 4.1 19.1 1.0
N C:GLN11 4.2 0.0 1.0
HZ3 D:LYS254 4.3 0.0 1.0
CB C:THR145 4.3 0.0 1.0
HB3 C:GLN11 4.4 0.0 1.0
HG3 C:GLU71 4.5 0.0 1.0
HA3 C:GLY10 4.5 0.0 1.0
H C:ALA99 4.5 0.0 1.0
CB C:GLN11 4.6 0.0 1.0
HB1 C:ALA99 4.6 0.0 1.0
CA C:GLY10 4.7 0.0 1.0
O1A C:GTP501 4.7 21.9 1.0
HD21 C:ASN101 4.7 0.0 1.0
PA C:GTP501 4.7 20.1 1.0
H C:GLY144 4.8 0.0 1.0
CG C:ASP69 4.8 0.0 1.0
CG C:GLU71 4.8 0.0 1.0
H C:GLY146 4.8 0.0 1.0
OD2 C:ASP69 4.8 0.0 1.0
OD1 C:ASP98 4.9 0.0 1.0
OE1 C:GLU71 4.9 0.0 1.0
N C:THR145 4.9 0.0 1.0
C C:GLY10 4.9 0.0 1.0
HD22 C:ASN101 4.9 0.0 1.0

Reference:

G.E.Debs, M.Cha, X.Liu, A.R.Huehn, C.V.Sindelar. Dynamic and Asymmetric Fluctuations in the Microtubule Wall Captured By High-Resolution Cryo-Electron Microscopy To Be Published.
Page generated: Tue Dec 15 01:38:22 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy