Magnesium in PDB 6wvt: Structural Basis of Alphae-Catenin - F-Actin Catch Bond Behavior

The binding sites of Magnesium atom in the Structural Basis of Alphae-Catenin - F-Actin Catch Bond Behavior (pdb code 6wvt). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 6 binding sites of Magnesium where determined in the Structural Basis of Alphae-Catenin - F-Actin Catch Bond Behavior, PDB code: 6wvt:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6;

Magnesium binding site 1 out of 6 in the Structural Basis of Alphae-Catenin - F-Actin Catch Bond Behavior


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structural Basis of Alphae-Catenin - F-Actin Catch Bond Behavior within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg801 b:81.6 occ:1.00 O1B B:ADP802 2.1 72.1 1.0 PB B:ADP802 2.5 72.1 1.0 O3B B:ADP802 2.6 72.1 1.0 NE2 B:GLN137 2.7 0.5 1.0 O2B B:ADP802 3.1 72.1 1.0 CA B:GLY156 3.8 83.7 1.0 CD B:GLN137 3.9 0.5 1.0 O3A B:ADP802 4.0 72.1 1.0 CA B:GLY13 4.2 77.0 1.0 N B:ASP157 4.2 76.7 1.0 O1A B:ADP802 4.2 72.1 1.0 N B:SER14 4.4 71.1 1.0 OE1 B:GLN137 4.4 0.5 1.0 C B:GLY156 4.5 83.7 1.0 PA B:ADP802 4.7 72.1 1.0 N B:GLY156 4.8 83.7 1.0 C B:GLY13 4.9 77.0 1.0 OD2 B:ASP11 4.9 87.4 1.0 CG B:GLN137 5.0 0.5 1.0

Magnesium binding site 2 out of 6 in the Structural Basis of Alphae-Catenin - F-Actin Catch Bond Behavior


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Structural Basis of Alphae-Catenin - F-Actin Catch Bond Behavior within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg801 b:58.3 occ:1.00 O1B D:ADP802 2.1 59.1 1.0 PB D:ADP802 2.5 59.1 1.0 O3B D:ADP802 2.6 59.1 1.0 NE2 D:GLN137 2.7 54.6 1.0 O2B D:ADP802 3.1 59.1 1.0 N D:SER14 3.7 58.5 1.0 CD D:GLN137 3.7 54.6 1.0 CA D:GLY13 3.8 56.8 1.0 O3A D:ADP802 4.0 59.1 1.0 OE1 D:GLN137 4.0 54.6 1.0 CA D:GLY156 4.1 51.7 1.0 N D:ASP157 4.2 57.8 1.0 O1A D:ADP802 4.2 59.1 1.0 C D:GLY13 4.3 56.8 1.0 OG D:SER14 4.4 58.5 1.0 CB D:SER14 4.6 58.5 1.0 C D:GLY156 4.7 51.7 1.0 PA D:ADP802 4.7 59.1 1.0 N D:GLY158 4.7 55.1 1.0 CA D:SER14 4.8 58.5 1.0

Magnesium binding site 3 out of 6 in the Structural Basis of Alphae-Catenin - F-Actin Catch Bond Behavior


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Structural Basis of Alphae-Catenin - F-Actin Catch Bond Behavior within 5.0Å range: probe atom residue distance (Å) B Occ E:Mg801 b:55.8 occ:1.00 O1B E:ADP802 2.1 57.0 1.0 PB E:ADP802 2.5 57.0 1.0 O3B E:ADP802 2.6 57.0 1.0 NE2 E:GLN137 2.6 55.9 1.0 O2B E:ADP802 3.1 57.0 1.0 CA E:GLY13 3.6 56.9 1.0 CD E:GLN137 3.6 55.9 1.0 N E:SER14 3.8 55.1 1.0 OE1 E:GLN137 3.9 55.9 1.0 O3A E:ADP802 4.0 57.0 1.0 O1A E:ADP802 4.2 57.0 1.0 C E:GLY13 4.3 56.9 1.0 CA E:GLY156 4.3 49.4 1.0 N E:ASP157 4.4 54.5 1.0 OG E:SER14 4.7 55.1 1.0 PA E:ADP802 4.7 57.0 1.0 N E:GLY13 4.8 56.9 1.0 OD1 E:ASP11 4.9 57.5 1.0 CG E:GLN137 4.9 55.9 1.0 CB E:SER14 4.9 55.1 1.0 C E:GLY156 5.0 49.4 1.0 CA E:SER14 5.0 55.1 1.0

Magnesium binding site 4 out of 6 in the Structural Basis of Alphae-Catenin - F-Actin Catch Bond Behavior


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Structural Basis of Alphae-Catenin - F-Actin Catch Bond Behavior within 5.0Å range: probe atom residue distance (Å) B Occ F:Mg801 b:69.3 occ:1.00 O1B F:ADP802 2.1 66.1 1.0 PB F:ADP802 2.5 66.1 1.0 O3B F:ADP802 2.6 66.1 1.0 NE2 F:GLN137 2.6 55.9 1.0 O2B F:ADP802 3.1 66.1 1.0 CA F:GLY156 3.5 55.7 1.0 CD F:GLN137 3.8 55.9 1.0 N F:ASP157 3.8 62.5 1.0 O3A F:ADP802 4.0 66.1 1.0 C F:GLY156 4.2 55.7 1.0 OE1 F:GLN137 4.2 55.9 1.0 O1A F:ADP802 4.2 66.1 1.0 N F:SER14 4.3 61.3 1.0 N F:GLY156 4.4 55.7 1.0 CA F:GLY13 4.4 63.6 1.0 OD1 F:ASP154 4.7 52.6 1.0 PA F:ADP802 4.7 66.1 1.0 N F:GLY158 4.8 57.2 1.0 OG F:SER14 4.9 61.3 1.0 C F:GLY13 5.0 63.6 1.0 CG F:GLN137 5.0 55.9 1.0

Magnesium binding site 5 out of 6 in the Structural Basis of Alphae-Catenin - F-Actin Catch Bond Behavior


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Structural Basis of Alphae-Catenin - F-Actin Catch Bond Behavior within 5.0Å range: probe atom residue distance (Å) B Occ H:Mg801 b:59.9 occ:1.00 O1B H:ADP802 2.1 58.0 1.0 PB H:ADP802 2.5 58.0 1.0 O3B H:ADP802 2.6 58.0 1.0 NE2 H:GLN137 2.6 56.2 1.0 O2B H:ADP802 3.1 58.0 1.0 CD H:GLN137 3.7 56.2 1.0 CA H:GLY13 3.8 58.0 1.0 O3A H:ADP802 4.0 58.0 1.0 N H:SER14 4.1 57.1 1.0 CA H:GLY156 4.1 50.1 1.0 OE1 H:GLN137 4.2 56.2 1.0 O2A H:ADP802 4.2 58.0 1.0 N H:ASP157 4.3 55.0 1.0 C H:GLY13 4.5 58.0 1.0 PA H:ADP802 4.7 58.0 1.0 C H:GLY156 4.8 50.1 1.0 OD1 H:ASP11 4.9 57.8 1.0 OD2 H:ASP11 4.9 57.8 1.0 CG H:GLN137 4.9 56.2 1.0

Magnesium binding site 6 out of 6 in the Structural Basis of Alphae-Catenin - F-Actin Catch Bond Behavior


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Structural Basis of Alphae-Catenin - F-Actin Catch Bond Behavior within 5.0Å range: probe atom residue distance (Å) B Occ I:Mg801 b:57.6 occ:1.00 O2B I:ADP802 2.1 54.4 1.0 PB I:ADP802 2.5 54.4 1.0 NE2 I:GLN137 2.5 56.6 1.0 O3B I:ADP802 2.6 54.4 1.0 O1B I:ADP802 3.1 54.4 1.0 CA I:GLY156 3.4 50.1 1.0 CD I:GLN137 3.8 56.6 1.0 O3A I:ADP802 4.0 54.4 1.0 N I:ASP157 4.0 54.6 1.0 C I:GLY156 4.2 50.1 1.0 O2A I:ADP802 4.2 54.4 1.0 N I:GLY156 4.3 50.1 1.0 OE1 I:GLN137 4.4 56.6 1.0 OD1 I:ASP154 4.5 53.1 1.0 CA I:GLY13 4.7 57.9 1.0 PA I:ADP802 4.7 54.4 1.0 N I:SER14 4.8 54.5 1.0 CG I:GLN137 4.8 56.6 1.0

X.P.Xu, S.Pokutta, M.Torres, M.F.Swift, D.Hanein, N.Volkmann, W.I.Weis. Structural Basis of Alpha E-Catenin-F-Actin Catch Bond Behavior. Elife V. 9 2020.
ISSN: ESSN 2050-084X
PubMed: 32915141
DOI: 10.7554/ELIFE.60878