Magnesium in PDB 6wwg: KIF14[391-772] Dimer Two-Heads-Bound State - Adp-Alfx in Complex with A Microtubule
Other elements in 6wwg:
The structure of KIF14[391-772] Dimer Two-Heads-Bound State - Adp-Alfx in Complex with A Microtubule also contains other interesting chemical elements:
Magnesium Binding Sites:
The binding sites of Magnesium atom in the KIF14[391-772] Dimer Two-Heads-Bound State - Adp-Alfx in Complex with A Microtubule
(pdb code 6wwg). This binding sites where shown within
5.0 Angstroms radius around Magnesium atom.
In total 3 binding sites of Magnesium where determined in the
KIF14[391-772] Dimer Two-Heads-Bound State - Adp-Alfx in Complex with A Microtubule, PDB code: 6wwg:
Jump to Magnesium binding site number:
1;
2;
3;
Magnesium binding site 1 out
of 3 in 6wwg
Go back to
Magnesium Binding Sites List in 6wwg
Magnesium binding site 1 out
of 3 in the KIF14[391-772] Dimer Two-Heads-Bound State - Adp-Alfx in Complex with A Microtubule
 Mono view
 Stereo pair view
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A full contact list of Magnesium with other atoms in the Mg binding
site number 1 of KIF14[391-772] Dimer Two-Heads-Bound State - Adp-Alfx in Complex with A Microtubule within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
K:Mg802
b:92.6
occ:1.00
|
OG
|
K:SER489
|
2.0
|
95.1
|
1.0
|
O2B
|
K:ADP801
|
2.0
|
96.9
|
1.0
|
F3
|
K:AF3800
|
2.1
|
92.4
|
1.0
|
OG
|
K:SER603
|
2.6
|
88.6
|
1.0
|
CB
|
K:SER603
|
3.1
|
88.6
|
1.0
|
CB
|
K:SER489
|
3.2
|
95.1
|
1.0
|
PB
|
K:ADP801
|
3.5
|
96.9
|
1.0
|
OD2
|
K:ASP638
|
3.7
|
87.3
|
1.0
|
AL
|
K:AF3800
|
3.7
|
92.4
|
1.0
|
O2A
|
K:ADP801
|
3.9
|
96.9
|
1.0
|
N
|
K:SER603
|
4.1
|
88.6
|
1.0
|
CA
|
K:SER603
|
4.2
|
88.6
|
1.0
|
N
|
K:SER489
|
4.2
|
95.1
|
1.0
|
CA
|
K:SER489
|
4.3
|
95.1
|
1.0
|
O3A
|
K:ADP801
|
4.3
|
96.9
|
1.0
|
O3B
|
K:ADP801
|
4.3
|
96.9
|
1.0
|
O1B
|
K:ADP801
|
4.4
|
96.9
|
1.0
|
NH2
|
K:ARG591
|
4.4
|
89.9
|
1.0
|
CG
|
K:ASP638
|
4.4
|
87.3
|
1.0
|
OD1
|
K:ASP638
|
4.4
|
87.3
|
1.0
|
NH1
|
K:ARG591
|
4.5
|
89.9
|
1.0
|
F2
|
K:AF3800
|
4.5
|
92.4
|
1.0
|
PA
|
K:ADP801
|
4.6
|
96.9
|
1.0
|
O
|
K:LEU639
|
4.7
|
80.8
|
1.0
|
CZ
|
K:ARG591
|
4.8
|
89.9
|
1.0
|
F1
|
K:AF3800
|
4.9
|
92.4
|
1.0
|
|
Magnesium binding site 2 out
of 3 in 6wwg
Go back to
Magnesium Binding Sites List in 6wwg
Magnesium binding site 2 out
of 3 in the KIF14[391-772] Dimer Two-Heads-Bound State - Adp-Alfx in Complex with A Microtubule
 Mono view
 Stereo pair view
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A full contact list of Magnesium with other atoms in the Mg binding
site number 2 of KIF14[391-772] Dimer Two-Heads-Bound State - Adp-Alfx in Complex with A Microtubule within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg502
b:48.4
occ:1.00
|
O1G
|
A:GTP501
|
2.0
|
51.9
|
1.0
|
O1B
|
A:GTP501
|
2.4
|
51.9
|
1.0
|
OD2
|
A:ASP98
|
3.2
|
53.6
|
1.0
|
PG
|
A:GTP501
|
3.2
|
51.9
|
1.0
|
OE2
|
A:GLU71
|
3.4
|
54.5
|
1.0
|
O3G
|
A:GTP501
|
3.5
|
51.9
|
1.0
|
OE1
|
A:GLN11
|
3.6
|
51.3
|
1.0
|
PB
|
A:GTP501
|
3.6
|
51.9
|
1.0
|
OD1
|
A:ASP69
|
3.8
|
53.0
|
1.0
|
NZ
|
B:LYS252
|
3.8
|
48.0
|
1.0
|
O3B
|
A:GTP501
|
3.9
|
51.9
|
1.0
|
CG
|
A:ASP98
|
3.9
|
53.6
|
1.0
|
OD1
|
A:ASP98
|
4.0
|
53.6
|
1.0
|
CB
|
A:GLN11
|
4.0
|
51.3
|
1.0
|
O2B
|
A:GTP501
|
4.2
|
51.9
|
1.0
|
OD2
|
A:ASP69
|
4.2
|
53.0
|
1.0
|
CD
|
A:GLU71
|
4.2
|
54.5
|
1.0
|
O1A
|
A:GTP501
|
4.4
|
51.9
|
1.0
|
CG
|
A:ASP69
|
4.4
|
53.0
|
1.0
|
O2G
|
A:GTP501
|
4.4
|
51.9
|
1.0
|
CD
|
A:GLN11
|
4.5
|
51.3
|
1.0
|
OE1
|
A:GLU71
|
4.7
|
54.5
|
1.0
|
N
|
A:GLN11
|
4.7
|
51.3
|
1.0
|
CE
|
B:LYS252
|
4.9
|
48.0
|
1.0
|
CB
|
A:GLU71
|
4.9
|
54.5
|
1.0
|
O3A
|
A:GTP501
|
4.9
|
51.9
|
1.0
|
O
|
B:ASN247
|
4.9
|
51.3
|
1.0
|
CG
|
A:GLN11
|
4.9
|
51.3
|
1.0
|
|
Magnesium binding site 3 out
of 3 in 6wwg
Go back to
Magnesium Binding Sites List in 6wwg
Magnesium binding site 3 out
of 3 in the KIF14[391-772] Dimer Two-Heads-Bound State - Adp-Alfx in Complex with A Microtubule
 Mono view
 Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 3 of KIF14[391-772] Dimer Two-Heads-Bound State - Adp-Alfx in Complex with A Microtubule within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Mg502
b:42.4
occ:1.00
|
O3G
|
E:GTP501
|
2.0
|
48.1
|
1.0
|
O1B
|
E:GTP501
|
2.7
|
48.1
|
1.0
|
OE1
|
E:GLU71
|
2.7
|
52.2
|
1.0
|
OD2
|
E:ASP98
|
3.0
|
50.7
|
1.0
|
PG
|
E:GTP501
|
3.2
|
48.1
|
1.0
|
O1G
|
E:GTP501
|
3.5
|
48.1
|
1.0
|
PB
|
E:GTP501
|
3.7
|
48.1
|
1.0
|
O3B
|
E:GTP501
|
3.8
|
48.1
|
1.0
|
CG
|
E:ASP98
|
3.9
|
50.7
|
1.0
|
CD
|
E:GLU71
|
4.0
|
52.2
|
1.0
|
O3A
|
E:GTP501
|
4.0
|
48.1
|
1.0
|
OD1
|
E:ASP98
|
4.1
|
50.7
|
1.0
|
OE1
|
E:GLN11
|
4.1
|
46.9
|
1.0
|
O1A
|
E:GTP501
|
4.3
|
48.1
|
1.0
|
CB
|
E:GLN11
|
4.3
|
46.9
|
1.0
|
NZ
|
I:LYS252
|
4.3
|
48.4
|
1.0
|
O2G
|
E:GTP501
|
4.4
|
48.1
|
1.0
|
N
|
E:GLN11
|
4.5
|
46.9
|
1.0
|
CB
|
E:GLU71
|
4.6
|
52.2
|
1.0
|
PA
|
E:GTP501
|
4.7
|
48.1
|
1.0
|
OE2
|
E:GLU71
|
4.7
|
52.2
|
1.0
|
O
|
E:ASP69
|
4.8
|
49.5
|
1.0
|
CD
|
E:GLN11
|
4.9
|
46.9
|
1.0
|
CG
|
E:GLU71
|
4.9
|
52.2
|
1.0
|
|
Reference:
M.P.M.H.Benoit,
A.B.Asenjo,
M.Paydar,
S.Dhakal,
B.Kwok,
H.Sosa.
Structural Basis of Mechano-Chemical Coupling By the Mitotic Kinesin KIF14 To Be Published.
Page generated: Tue Oct 1 23:17:10 2024
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