Magnesium in PDB 6x1g: Crystal Structure of A Gef Domain From the Orientia Tsutsugamushi Protein Otdub in Complex with RAC1

Enzymatic activity of Crystal Structure of A Gef Domain From the Orientia Tsutsugamushi Protein Otdub in Complex with RAC1

All present enzymatic activity of Crystal Structure of A Gef Domain From the Orientia Tsutsugamushi Protein Otdub in Complex with RAC1:
3.6.5.2;

Protein crystallography data

The structure of Crystal Structure of A Gef Domain From the Orientia Tsutsugamushi Protein Otdub in Complex with RAC1, PDB code: 6x1g was solved by C.S.Lim, Y.Xiong, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

*Resolution Low / High (Å)*	48.05 / 1.60
*Space group*	P 1
*Cell size a, b, c (Å), α, β, γ (°)*	50.063, 54.160, 94.004, 83.37, 76.34, 62.52
*R / R_free (%)*	18.1 / 21.8

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of A Gef Domain From the Orientia Tsutsugamushi Protein Otdub in Complex with RAC1 (pdb code 6x1g). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of A Gef Domain From the Orientia Tsutsugamushi Protein Otdub in Complex with RAC1, PDB code: 6x1g:

Magnesium binding site 1 out of 1 in 6x1g

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Magnesium Binding Sites List in 6x1g

Magnesium binding site 1 out of 1 in the Crystal Structure of A Gef Domain From the Orientia Tsutsugamushi Protein Otdub in Complex with RAC1

Mono view

Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of A Gef Domain From the Orientia Tsutsugamushi Protein Otdub in Complex with RAC1 within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
C:Mg801 b:66.9 occ:1.00	O	C:HOH923	2.2	38.1	1.0
	O	C:HOH972	2.2	32.2	1.0
	O	C:HOH974	2.3	38.4	1.0
	O	C:HOH948	2.7	55.1	1.0
	CD2	C:LEU701	4.0	33.5	1.0
	O	C:LYS706	4.1	35.8	1.0
	CA	C:HIS707	4.1	40.2	1.0
	O	C:HOH915	4.2	32.4	1.0
	N	C:HIS708	4.2	33.0	1.0
	O	C:HOH963	4.3	28.4	1.0
	O	C:HOH938	4.5	34.5	1.0
	C	C:HIS707	4.5	36.3	1.0
	C	C:LYS706	4.7	36.9	1.0
	OE1	C:GLN575	4.8	30.4	1.0
	CD	C:LYS578	4.8	34.5	1.0
	NE2	C:GLN575	4.8	27.1	1.0
	CH2	D:TRP56	4.8	30.6	1.0
	CZ2	D:TRP56	4.8	32.1	1.0
	N	C:HIS707	4.9	37.9	1.0
	CE	C:MET574	4.9	30.2	1.0
	CB	C:HIS707	4.9	46.3	1.0
	O	C:ASP705	5.0	41.1	1.0

Reference:

C.Lim, J.M.Berk, A.Blaise, J.Bircher, A.J.Koleske, M.Hochstrasser, Y.Xiong. Crystal Structure of A Guanine Nucleotide Exchange Factor Encoded By the Scrub Typhus Pathogen Orientia Tsutsugamushi . Proc.Natl.Acad.Sci.Usa 2020.
ISSN: ESSN 1091-6490
PubMed: 33184172
DOI: 10.1073/PNAS.2018163117

Page generated: Tue Oct 1 23:20:32 2024

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