Magnesium in PDB 6x7r: E. Coli Beta-Ketoacyl-[Acyl Carrier Protein] Synthase III (Fabh) in Complex with Oxa(Dethia)-Coenzyme A

Enzymatic activity of E. Coli Beta-Ketoacyl-[Acyl Carrier Protein] Synthase III (Fabh) in Complex with Oxa(Dethia)-Coenzyme A

All present enzymatic activity of E. Coli Beta-Ketoacyl-[Acyl Carrier Protein] Synthase III (Fabh) in Complex with Oxa(Dethia)-Coenzyme A:
2.3.1.180;

Protein crystallography data

The structure of E. Coli Beta-Ketoacyl-[Acyl Carrier Protein] Synthase III (Fabh) in Complex with Oxa(Dethia)-Coenzyme A, PDB code: 6x7r was solved by A.B.Benjamin, L.M.Stunkard, J.Ling, J.N.Nice, J.R.Lohman, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

*Resolution Low / High (Å)*	23.59 / 1.35
*Space group*	P 4₁ 2₁ 2
*Cell size a, b, c (Å), α, β, γ (°)*	72.629, 72.629, 102.868, 90, 90, 90
*R / R_free (%)*	14.5 / 17.6

Magnesium Binding Sites:

The binding sites of Magnesium atom in the E. Coli Beta-Ketoacyl-[Acyl Carrier Protein] Synthase III (Fabh) in Complex with Oxa(Dethia)-Coenzyme A (pdb code 6x7r). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the E. Coli Beta-Ketoacyl-[Acyl Carrier Protein] Synthase III (Fabh) in Complex with Oxa(Dethia)-Coenzyme A, PDB code: 6x7r:

Magnesium binding site 1 out of 1 in 6x7r

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Magnesium Binding Sites List in 6x7r

Magnesium binding site 1 out of 1 in the E. Coli Beta-Ketoacyl-[Acyl Carrier Protein] Synthase III (Fabh) in Complex with Oxa(Dethia)-Coenzyme A

Mono view

Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of E. Coli Beta-Ketoacyl-[Acyl Carrier Protein] Synthase III (Fabh) in Complex with Oxa(Dethia)-Coenzyme A within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
A:Mg402 b:35.5 occ:1.00	O	A:HOH570	2.2	31.6	1.0
	O	A:HOH695	2.2	32.9	1.0
	OD1	A:ASP21	3.8	21.8	1.0
	O	A:HOH578	4.0	30.9	1.0
	O	A:HOH592	4.0	26.2	1.0
	O	A:HOH633	4.4	24.0	1.0
	O	A:HOH795	4.5	28.8	1.0
	OD2	A:ASP21	4.6	20.5	1.0
	CG	A:ASP21	4.6	19.7	1.0

Reference:

A.B.Benjamin, L.M.Stunkard, J.Ling, J.N.Nice, J.R.Lohman. E. Coli Beta-Ketoacyl-[Acyl Carrier Protein] Synthase III (Fabh) in Complex with Oxa(Dethia)-Coenzyme A To Be Published.

Page generated: Tue Oct 1 23:27:33 2024

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