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Magnesium in PDB 6x7r: E. Coli Beta-Ketoacyl-[Acyl Carrier Protein] Synthase III (Fabh) in Complex with Oxa(Dethia)-Coenzyme A

Enzymatic activity of E. Coli Beta-Ketoacyl-[Acyl Carrier Protein] Synthase III (Fabh) in Complex with Oxa(Dethia)-Coenzyme A

All present enzymatic activity of E. Coli Beta-Ketoacyl-[Acyl Carrier Protein] Synthase III (Fabh) in Complex with Oxa(Dethia)-Coenzyme A:
2.3.1.180;

Protein crystallography data

The structure of E. Coli Beta-Ketoacyl-[Acyl Carrier Protein] Synthase III (Fabh) in Complex with Oxa(Dethia)-Coenzyme A, PDB code: 6x7r was solved by A.B.Benjamin, L.M.Stunkard, J.Ling, J.N.Nice, J.R.Lohman, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 23.59 / 1.35
Space group P 41 21 2
Cell size a, b, c (Å), α, β, γ (°) 72.629, 72.629, 102.868, 90, 90, 90
R / Rfree (%) 14.5 / 17.6

Magnesium Binding Sites:

The binding sites of Magnesium atom in the E. Coli Beta-Ketoacyl-[Acyl Carrier Protein] Synthase III (Fabh) in Complex with Oxa(Dethia)-Coenzyme A (pdb code 6x7r). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the E. Coli Beta-Ketoacyl-[Acyl Carrier Protein] Synthase III (Fabh) in Complex with Oxa(Dethia)-Coenzyme A, PDB code: 6x7r:

Magnesium binding site 1 out of 1 in 6x7r

Go back to Magnesium Binding Sites List in 6x7r
Magnesium binding site 1 out of 1 in the E. Coli Beta-Ketoacyl-[Acyl Carrier Protein] Synthase III (Fabh) in Complex with Oxa(Dethia)-Coenzyme A


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of E. Coli Beta-Ketoacyl-[Acyl Carrier Protein] Synthase III (Fabh) in Complex with Oxa(Dethia)-Coenzyme A within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg402

b:35.5
occ:1.00
 O A:HOH570 2.2 31.6 1.0
O A:HOH695 2.2 32.9 1.0
OD1 A:ASP21 3.8 21.8 1.0
O A:HOH578 4.0 30.9 1.0
O A:HOH592 4.0 26.2 1.0
O A:HOH633 4.4 24.0 1.0
O A:HOH795 4.5 28.8 1.0
OD2 A:ASP21 4.6 20.5 1.0
CG A:ASP21 4.6 19.7 1.0

Reference:

A.B.Benjamin, L.M.Stunkard, J.Ling, J.N.Nice, J.R.Lohman. E. Coli Beta-Ketoacyl-[Acyl Carrier Protein] Synthase III (Fabh) in Complex with Oxa(Dethia)-Coenzyme A To Be Published.
Page generated: Tue Oct 1 23:27:33 2024

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