Magnesium in PDB 6xav: Cryoem Structure of E. Coli Rho-Dependent Transcription Pre- Termination Complex Bound with Nusg

Enzymatic activity of Cryoem Structure of E. Coli Rho-Dependent Transcription Pre- Termination Complex Bound with Nusg

All present enzymatic activity of Cryoem Structure of E. Coli Rho-Dependent Transcription Pre- Termination Complex Bound with Nusg:
2.7.7.6;

Other elements in 6xav:

The structure of Cryoem Structure of E. Coli Rho-Dependent Transcription Pre- Termination Complex Bound with Nusg also contains other interesting chemical elements:

Zinc

(Zn)

2 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Cryoem Structure of E. Coli Rho-Dependent Transcription Pre- Termination Complex Bound with Nusg (pdb code 6xav). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Cryoem Structure of E. Coli Rho-Dependent Transcription Pre- Termination Complex Bound with Nusg, PDB code: 6xav:

Magnesium binding site 1 out of 1 in 6xav

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Magnesium Binding Sites List in 6xav

Magnesium binding site 1 out of 1 in the Cryoem Structure of E. Coli Rho-Dependent Transcription Pre- Termination Complex Bound with Nusg

Mono view

Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryoem Structure of E. Coli Rho-Dependent Transcription Pre- Termination Complex Bound with Nusg within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
J:Mg1501 b:65.5 occ:1.00	O3'	R:A18	2.1	75.9	1.0
	OD1	J:ASP460	2.1	60.0	1.0
	OD1	J:ASP464	2.1	64.0	1.0
	OD2	J:ASP464	2.2	64.0	1.0
	CG	J:ASP464	2.5	64.0	1.0
	O2'	R:A18	2.9	75.9	1.0
	CG	J:ASP460	3.2	60.0	1.0
	C3'	R:A18	3.2	75.9	1.0
	OD1	J:ASP462	3.4	60.4	1.0
	C2'	R:A18	3.5	75.9	1.0
	OD2	J:ASP460	3.6	60.0	1.0
	C4'	R:A18	3.9	75.9	1.0
	CB	J:ASP464	4.0	64.0	1.0
	N	J:ASP460	4.0	60.0	1.0
	NH1	J:ARG425	4.1	55.0	1.0
	CG	J:ASP462	4.3	60.4	1.0
	OD2	J:ASP462	4.4	60.4	1.0
	CB	J:ASP460	4.5	60.0	1.0
	CA	J:ASP460	4.7	60.0	1.0
	CA	J:ASP464	4.7	64.0	1.0
	CA	J:ALA459	4.8	55.9	1.0
	C1'	R:A18	4.8	75.9	1.0
	C5'	R:A18	4.8	75.9	1.0
	O	J:ASP460	4.8	60.0	1.0
	N	J:ASP464	4.9	64.0	1.0
	CZ	J:ARG425	4.9	55.0	1.0
	O4'	R:A18	4.9	75.9	1.0
	C	J:ASP460	4.9	60.0	1.0
	C	J:ALA459	4.9	55.9	1.0
	O	J:ASN458	4.9	54.3	1.0

Reference:

Z.T.Hao, V.Epshtein, K.H.Kim, S.Proshkin, V.Svetlov, V.Kamarthapu, B.Bharati, A.Mironov, T.Walz, E.Nudler. Pre-Termination Transcription Complex: Structure and Function Mol.Cell 2020.
ISSN: ISSN 1097-2765
DOI: 10.1016/J.MOLCEL.2020.11.013

Page generated: Tue Oct 1 23:29:08 2024

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