Magnesium in PDB 6xbw: Cryo-Em Structure of V-Atpase From Bovine Brain, State 1

All present enzymatic activity of Cryo-Em Structure of V-Atpase From Bovine Brain, State 1:
7.1.2.2;

The binding sites of Magnesium atom in the Cryo-Em Structure of V-Atpase From Bovine Brain, State 1 (pdb code 6xbw). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Cryo-Em Structure of V-Atpase From Bovine Brain, State 1, PDB code: 6xbw:

Magnesium binding site 1 out of 1 in the Cryo-Em Structure of V-Atpase From Bovine Brain, State 1


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of V-Atpase From Bovine Brain, State 1 within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg701 b:67.0 occ:1.00 O3B C:ADP702 2.2 80.0 1.0 OG1 C:THR257 2.5 53.3 1.0 NH1 C:ARG280 3.4 43.0 1.0 OE1 C:GLU283 3.4 48.7 1.0 OE2 C:GLU283 3.4 48.7 1.0 PB C:ADP702 3.6 80.0 1.0 CB C:THR257 3.7 53.3 1.0 CD C:GLU283 3.8 48.7 1.0 OD2 C:ASP349 4.1 33.9 1.0 O2B C:ADP702 4.1 80.0 1.0 N C:THR257 4.2 53.3 1.0 O2A C:ADP702 4.2 80.0 1.0 O1A C:ADP702 4.2 80.0 1.0 O1B C:ADP702 4.3 80.0 1.0 CA C:THR257 4.5 53.3 1.0 CZ C:ARG280 4.6 43.0 1.0 PA C:ADP702 4.6 80.0 1.0 O3A C:ADP702 4.7 80.0 1.0 CB C:LYS256 4.8 47.6 1.0 C C:LYS256 4.8 47.6 1.0 CG2 C:THR257 4.8 53.3 1.0 OD1 C:ASP349 4.9 33.9 1.0 CG C:ASP349 4.9 33.9 1.0

R.Wang, T.Long, A.Hassan, J.Wang, Y.Sun, X.S.Xie, X.Li. Cryo-Em Structures of Intact V-Atpase From Bovine Brain. Nat Commun V. 11 3921 2020.
ISSN: ESSN 2041-1723
PubMed: 32764564
DOI: 10.1038/S41467-020-17762-9