Magnesium in PDB 6xby: Cryo-Em Structure of V-Atpase From Bovine Brain, State 2

All present enzymatic activity of Cryo-Em Structure of V-Atpase From Bovine Brain, State 2:
7.1.2.2;

The binding sites of Magnesium atom in the Cryo-Em Structure of V-Atpase From Bovine Brain, State 2 (pdb code 6xby). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Cryo-Em Structure of V-Atpase From Bovine Brain, State 2, PDB code: 6xby:

Magnesium binding site 1 out of 1 in the Cryo-Em Structure of V-Atpase From Bovine Brain, State 2


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of V-Atpase From Bovine Brain, State 2 within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg701 b:59.2 occ:1.00 O3B D:ADP601 2.2 71.9 1.0 OG1 A:THR257 2.8 60.0 1.0 PB D:ADP601 3.5 71.9 1.0 NH1 A:ARG280 3.6 47.3 1.0 O2B D:ADP601 3.9 71.9 1.0 CB A:THR257 3.9 60.0 1.0 OE1 A:GLU283 4.0 56.6 1.0 O1B D:ADP601 4.1 71.9 1.0 NZ A:LYS256 4.2 53.9 1.0 OE2 A:GLU283 4.2 56.6 1.0 N A:THR257 4.5 60.0 1.0 O2A D:ADP601 4.5 71.9 1.0 O1A D:ADP601 4.5 71.9 1.0 CD A:GLU283 4.6 56.6 1.0 OD1 A:ASP349 4.6 34.7 1.0 O3A D:ADP601 4.7 71.9 1.0 CZ A:ARG280 4.8 47.3 1.0 CB A:LYS256 4.8 53.9 1.0 CA A:THR257 4.8 60.0 1.0 CE A:LYS256 4.8 53.9 1.0 PA D:ADP601 4.8 71.9 1.0 OD2 A:ASP349 4.9 34.7 1.0 CG2 A:THR257 5.0 60.0 1.0

R.Wang, T.Long, A.Hassan, J.Wang, Y.Sun, X.S.Xie, X.Li. Cryo-Em Structures of Intact V-Atpase From Bovine Brain. Nat Commun V. 11 3921 2020.
ISSN: ESSN 2041-1723
PubMed: 32764564
DOI: 10.1038/S41467-020-17762-9