Magnesium in PDB 6xg6: Full-Length Human Mitochondrial HSP90 (TRAP1) with Adp-BEF3

The structure of Full-Length Human Mitochondrial HSP90 (TRAP1) with Adp-BEF3 also contains other interesting chemical elements:

Fluorine	(F)	6 atoms
Potassium	(K)	2 atoms

The binding sites of Magnesium atom in the Full-Length Human Mitochondrial HSP90 (TRAP1) with Adp-BEF3 (pdb code 6xg6). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Full-Length Human Mitochondrial HSP90 (TRAP1) with Adp-BEF3, PDB code: 6xg6:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Full-Length Human Mitochondrial HSP90 (TRAP1) with Adp-BEF3


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Full-Length Human Mitochondrial HSP90 (TRAP1) with Adp-BEF3 within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg903 b:39.0 occ:1.00 F1 A:BEF902 2.0 40.4 1.0 OD1 A:ASN119 2.1 41.6 1.0 O3B A:ADP901 2.4 51.2 1.0 O1B A:ADP901 3.2 51.2 1.0 PB A:ADP901 3.2 51.2 1.0 CG A:ASN119 3.3 41.6 1.0 BE A:BEF902 3.5 40.4 1.0 O3A A:ADP901 3.5 51.2 1.0 CA A:GLY199 3.7 40.0 1.0 OE1 A:GLU115 3.7 38.7 1.0 O1A A:ADP901 3.9 51.2 1.0 ND2 A:ASN119 3.9 41.6 1.0 F3 A:BEF902 4.0 40.4 1.0 O A:GLU115 4.2 38.7 1.0 PA A:ADP901 4.3 51.2 1.0 N A:GLY199 4.3 40.0 1.0 N A:ASN119 4.4 41.6 1.0 CA A:GLY204 4.4 39.7 1.0 NH1 A:ARG402 4.4 37.3 1.0 OD2 A:ASP122 4.4 46.4 1.0 CB A:ASN119 4.5 41.6 1.0 CA A:ASN119 4.5 41.6 1.0 CB A:SER118 4.6 39.0 1.0 F2 A:BEF902 4.6 40.4 1.0 O2B A:ADP901 4.6 51.2 1.0 N A:GLY204 4.8 39.7 1.0 C A:SER118 4.8 39.0 1.0 O5' A:ADP901 4.9 51.2 1.0 C A:GLY199 4.9 40.0 1.0 CD A:GLU115 5.0 38.7 1.0 CZ A:ARG402 5.0 37.3 1.0

Magnesium binding site 2 out of 2 in the Full-Length Human Mitochondrial HSP90 (TRAP1) with Adp-BEF3


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Full-Length Human Mitochondrial HSP90 (TRAP1) with Adp-BEF3 within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg903 b:42.7 occ:1.00 OD1 B:ASN119 2.1 39.1 1.0 O1B B:ADP901 2.1 51.2 1.0 O1A B:ADP901 2.1 51.2 1.0 F2 B:BEF902 2.5 37.9 1.0 ND2 B:ASN119 2.6 39.1 1.0 CG B:ASN119 2.7 39.1 1.0 CA B:GLY204 2.9 36.9 1.0 PA B:ADP901 3.3 51.2 1.0 PB B:ADP901 3.4 51.2 1.0 BE B:BEF902 3.4 37.9 1.0 C B:GLY204 3.4 36.9 1.0 O3A B:ADP901 3.4 51.2 1.0 N B:GLY204 3.6 36.9 1.0 OE2 B:GLU115 3.6 36.4 1.0 N B:PHE205 3.7 37.4 1.0 O B:GLU115 3.7 36.4 1.0 O B:GLY204 4.1 36.9 1.0 O2B B:ADP901 4.2 51.2 1.0 CB B:ASN119 4.2 39.1 1.0 F3 B:BEF902 4.3 37.9 1.0 O5' B:ADP901 4.3 51.2 1.0 CB B:GLU115 4.4 36.4 1.0 C B:GLU115 4.4 36.4 1.0 O2A B:ADP901 4.5 51.2 1.0 O3B B:ADP901 4.5 51.2 1.0 F1 B:BEF902 4.6 37.9 1.0 CD B:GLU115 4.6 36.4 1.0 CA B:GLU115 4.7 36.4 1.0 CA B:PHE205 4.7 37.4 1.0 N B:ASN119 4.8 39.1 1.0 CA B:ASN119 4.8 39.1 1.0 C B:VAL203 4.9 35.6 1.0 CG B:GLU115 5.0 36.4 1.0

F.Wang, Y.Liu, Z.Yu, S.Li, S.Feng, Y.Cheng, D.A.Agard. General and Robust Covalently Linked Graphene Oxide Affinity Grids For High-Resolution Cryo-Em. Proc.Natl.Acad.Sci.Usa V. 117 24269 2020.
ISSN: ESSN 1091-6490
PubMed: 32913054
DOI: 10.1073/PNAS.2009707117