Magnesium in PDB 6xgo: Self-Assembly of A 3D Dna Crystal Lattice (4X5 Junction Version) Containing the J34 Immobile Holliday Junction

The structure of Self-Assembly of A 3D Dna Crystal Lattice (4X5 Junction Version) Containing the J34 Immobile Holliday Junction, PDB code: 6xgo was solved by C.R.Simmons, T.Macculloch, N.Stephanopoulos, H.Yan, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	50.00 / 3.00
Space group	P 32
Cell size a, b, c (Å), α, β, γ (°)	68.81, 68.81, 59.712, 90, 90, 120
R / Rfree (%)	21.1 / 23.4

The binding sites of Magnesium atom in the Self-Assembly of A 3D Dna Crystal Lattice (4X5 Junction Version) Containing the J34 Immobile Holliday Junction (pdb code 6xgo). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Self-Assembly of A 3D Dna Crystal Lattice (4X5 Junction Version) Containing the J34 Immobile Holliday Junction, PDB code: 6xgo:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Self-Assembly of A 3D Dna Crystal Lattice (4X5 Junction Version) Containing the J34 Immobile Holliday Junction


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Self-Assembly of A 3D Dna Crystal Lattice (4X5 Junction Version) Containing the J34 Immobile Holliday Junction within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg101 b:63.6 occ:1.00 O6 C:DG4 3.9 54.7 1.0 N7 C:DG4 4.1 59.6 1.0 OP2 C:DA3 4.1 66.3 1.0 N7 C:DA3 4.4 49.4 1.0 C6 C:DG4 4.7 62.1 1.0 OP1 C:DT2 4.7 54.8 1.0 C5 C:DG4 4.8 49.2 1.0 C8 C:DA3 5.0 53.6 1.0

Magnesium binding site 2 out of 2 in the Self-Assembly of A 3D Dna Crystal Lattice (4X5 Junction Version) Containing the J34 Immobile Holliday Junction


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Self-Assembly of A 3D Dna Crystal Lattice (4X5 Junction Version) Containing the J34 Immobile Holliday Junction within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg101 b:74.5 occ:1.00 C7 D:DT10 4.2 61.2 1.0 OP1 D:DG9 4.3 75.2 1.0 O6 D:DG11 4.4 63.0 1.0 N7 D:DG11 4.4 58.9 1.0 O4 D:DT10 4.6 59.0 1.0 C5 D:DT10 4.9 48.1 1.0 C4 D:DT10 5.0 59.2 1.0

C.R.Simmons, T.Macculloch, N.Stephanopoulos, H.Yan. Structural and Computational Based Approach For the Creation of A Toolbox of Immobile Holliday Junctions For Dna-Directed Self-Assembly To Be Published.